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Merge pull request #295 from obophenotype/issue276-3
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Fix or improve labels
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@rays22
rays22 authored Oct 18, 2023
2 parents 9d8fc39 + b931c27 commit 41fd2d0
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12 changes: 6 additions & 6 deletions src/patterns/data/default/entity_attribute.tsv
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Expand Up @@ -1240,7 +1240,7 @@ OBA:0002278 GO:0030097 hemopoiesis PATO:0002181 displaced
OBA:0002279 UBERON:0008341 columella nasi PATO:0000122 length
OBA:0002280 UBERON:0001456 face PATO:0000052 shape
OBA:0002281 UBERON:0008200 forehead PATO:0000140 position
OBA:0002282 UBERON:0001988 feces PATO:0001548 quality of a liquid
OBA:0002282 wateriness of faeces UBERON:0001988 feces PATO:0001548 quality of a liquid faeces liquidness|wateriness of feces https://orcid.org/0000-0001-8314-2140
OBA:0002283 GO:0030421 defecation PATO:0000044 frequency
OBA:0002284 UBERON:0001165 pyloric antrum PATO:0000141 structure
OBA:0002285 UBERON:0001245 anus PATO:0000136 closure
Expand Down Expand Up @@ -4313,7 +4313,7 @@ OBA:2045266 carotid artery wall area attribute UBERON:0037094 wall of common car
OBA:2045267 cerebral cortex area attribute UBERON:0000956 cerebral cortex PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045268 striated muscle fiber area attribute CL:0000737 striated muscle cell PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045269 aortic vascular smooth muscle cell calcification attribute CL:0002539 aortic smooth muscle cell PATO:0001447 calcified https://orcid.org/0000-0001-8314-2140
OBA:2045270 basal ganglia growth attribute UBERON:0002420 basal ganglion PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045270 basal ganglion growth attribute UBERON:0002420 basal ganglion PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045271 brain growth attribute UBERON:0000955 brain PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045272 cerebellum growth attribute UBERON:0002037 cerebellum PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045273 cerebral cortex growth attribute UBERON:0000956 cerebral cortex PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
Expand All @@ -4329,15 +4329,15 @@ OBA:2045282 facial pigmentation UBERON:0001456 face PATO:0002247 degree of pigme
OBA:2045283 anterior chamber of eyeball pressure UBERON:0001766 anterior chamber of eyeball PATO:0001025 pressure https://orcid.org/0000-0001-8314-2140
OBA:2045284 microglial activation attribute CL:0000129 microglial cell PATO:0002354 active https://orcid.org/0000-0001-8314-2140
OBA:2045285 erosive tooth wear attribute UBERON:0001091 calcareous tooth PATO:0002453 eroding https://orcid.org/0000-0001-8314-2140
OBA:2045286 cortisol secretion attribute GO:0043400 cortisol secretion PATO:0015002 process efficacy https://orcid.org/0000-0001-8314-2140
OBA:2045287 platelet reactivity attribute GO:0030168 platelet activation PATO:0015002 process efficacy https://orcid.org/0000-0001-8314-2140
OBA:2045288 visual memory attribute NBO:0000196 visual memory PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045286 cortisol secretion efficacy GO:0043400 cortisol secretion PATO:0015002 process efficacy https://orcid.org/0000-0001-8314-2140
OBA:2045287 platelet reactivity efficacy GO:0030168 platelet activation PATO:0015002 process efficacy https://orcid.org/0000-0001-8314-2140
OBA:2045288 visual memory process attribute NBO:0000196 visual memory PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045289 fatty acid desaturase enzyme activity attribute GO:0019395 fatty acid oxidation PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045290 angiotensin converting enzyme activity attribute PR:000001322 angiotensin-converting enzyme PATO:0001414 catalytic activity https://orcid.org/0000-0001-8314-2140
OBA:2045291 cerebrospinal fluid composition attribute UBERON:0001359 cerebrospinal fluid PATO:0000025 composition https://orcid.org/0000-0001-8314-2140
OBA:2045292 sensory perception of taste attribute GO:0050909 sensory perception of taste PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045293 sexual activity behaviour attribute NBO:0000034 sexual activity PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045294 asparaginase activity GO:0006530 asparagine catabolic process PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045295 brain connectivity attribute UBERON:0000955 brain PATO:0000141 structure https://orcid.org/0000-0001-8314-2140
OBA:2045296 attriibute of defense response to other organism GO:0098542 defense response to other organism PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045296 defense response to other organism process attribute GO:0098542 defense response to other organism PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045328 DNA methylation level GO:0006306 DNA methylation PATO:0002062 physical quality of a process https://orcid.org/0000-0001-8314-2140
31 changes: 17 additions & 14 deletions src/patterns/definitions.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/oba/patterns/definitions.owl>
<http://purl.obolibrary.org/obo/oba/releases/2023-10-12/patterns/definitions.owl>
Annotation(owl:versionInfo "2023-10-12"^^xsd:string)
<http://purl.obolibrary.org/obo/oba/releases/2023-10-17/patterns/definitions.owl>
Annotation(owl:versionInfo "2023-10-17"^^xsd:string)

Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10033>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10112>))
Expand Down Expand Up @@ -25089,11 +25089,14 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_0002281> "forehead position"^^xsd:string)
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_0002281> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000140> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0008200>)))

# Class: <http://purl.obolibrary.org/obo/OBA_0002282> (feces quality of a liquid)
# Class: <http://purl.obolibrary.org/obo/OBA_0002282> (wateriness of faeces)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_0002282> "The quality of a liquid of a feces."^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_0002282> "https://orcid.org/0000-0001-8314-2140"^^xsd:string)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_0002282> "faeces liquidness"^^xsd:string)
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_0002282> "quality of a liquid of feces"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_0002282> "feces quality of a liquid"^^xsd:string)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_0002282> "wateriness of feces"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_0002282> "wateriness of faeces"^^xsd:string)
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_0002282> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001548> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001988>)))

# Class: <http://purl.obolibrary.org/obo/OBA_0002283> (defecation frequency)
Expand Down Expand Up @@ -100540,12 +100543,12 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045269> "aortic vascular smooth muscle cell calcification attribute"^^xsd:string)
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045269> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001447> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/CL_0002539>)))

# Class: <http://purl.obolibrary.org/obo/OBA_2045270> (basal ganglia growth attribute)
# Class: <http://purl.obolibrary.org/obo/OBA_2045270> (basal ganglion growth attribute)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2045270> "The growth rate of a basal ganglion."^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2045270> "https://orcid.org/0000-0001-8314-2140"^^xsd:string)
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045270> "growth rate of basal ganglion"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045270> "basal ganglia growth attribute"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045270> "basal ganglion growth attribute"^^xsd:string)
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045270> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001492> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0002420>)))

# Class: <http://purl.obolibrary.org/obo/OBA_2045271> (brain growth attribute)
Expand Down Expand Up @@ -100668,28 +100671,28 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045285> "erosive tooth wear attribute"^^xsd:string)
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045285> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0002453> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001091>)))

# Class: <http://purl.obolibrary.org/obo/OBA_2045286> (cortisol secretion attribute)
# Class: <http://purl.obolibrary.org/obo/OBA_2045286> (cortisol secretion efficacy)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2045286> "The process efficacy of a cortisol secretion."^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2045286> "https://orcid.org/0000-0001-8314-2140"^^xsd:string)
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045286> "process efficacy of cortisol secretion"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045286> "cortisol secretion attribute"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045286> "cortisol secretion efficacy"^^xsd:string)
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045286> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0015002> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0043400>)))

# Class: <http://purl.obolibrary.org/obo/OBA_2045287> (platelet reactivity attribute)
# Class: <http://purl.obolibrary.org/obo/OBA_2045287> (platelet reactivity efficacy)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2045287> "The process efficacy of a platelet activation."^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2045287> "https://orcid.org/0000-0001-8314-2140"^^xsd:string)
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045287> "process efficacy of platelet activation"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045287> "platelet reactivity attribute"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045287> "platelet reactivity efficacy"^^xsd:string)
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045287> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0015002> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0030168>)))

# Class: <http://purl.obolibrary.org/obo/OBA_2045288> (visual memory attribute)
# Class: <http://purl.obolibrary.org/obo/OBA_2045288> (visual memory process attribute)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2045288> "The process quality of a visual memory."^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2045288> "https://orcid.org/0000-0001-8314-2140"^^xsd:string)
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045288> "process quality of visual memory"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045288> "visual memory attribute"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045288> "visual memory process attribute"^^xsd:string)
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045288> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001236> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/NBO_0000196>)))

# Class: <http://purl.obolibrary.org/obo/OBA_2045289> (fatty acid desaturase enzyme activity attribute)
Expand Down Expand Up @@ -100748,12 +100751,12 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045295> "brain connectivity attribute"^^xsd:string)
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045295> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000141> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0000955>)))

# Class: <http://purl.obolibrary.org/obo/OBA_2045296> (attriibute of defense response to other organism)
# Class: <http://purl.obolibrary.org/obo/OBA_2045296> (defense response to other organism process attribute)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2045296> "The process quality of a defense response to other organism."^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2045296> "https://orcid.org/0000-0001-8314-2140"^^xsd:string)
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2045296> "process quality of defense response to other organism"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045296> "attriibute of defense response to other organism"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2045296> "defense response to other organism process attribute"^^xsd:string)
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2045296> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001236> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0098542>)))

# Class: <http://purl.obolibrary.org/obo/OBA_2045297> (trait in response to bone density conservation agent)
Expand Down

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