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RF+ENH: provide bids schema driven support for manipulation of bids filenames #544

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RF+ENH: provide bids schema driven support for manipulation of bids filenames #544

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Commits on Mar 29, 2022

  1. RF: move .bids into .bids/ subpackage and move tests along 

    This would open for a better structuring of BIDS support code etc.

All bids.utils are imported within bids/__init__.py so there should be
no effect on imports from heudiconv.bids
    @yarikoptic
    yarikoptic committed Mar 29, 2022
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  2. Add entities objects+rules from bids v1.7.0 

    ATM we will need only these two files to establish consistent
order of the entities in the filenames.  Later we might want to
carry a more complete copy of the schema, or may be eventually some
proper  bidsschema  python package would appear to provide desired
functionality anyways
    @yarikoptic
    yarikoptic committed Mar 29, 2022
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  3. RF: boost the BIDS version we list to 1.7.0 since that is what schema… 

    … will be from
    @yarikoptic
    yarikoptic committed Mar 29, 2022
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  4. ENH: added populating order of entities from bids schema copy

    @yarikoptic
    yarikoptic committed Mar 29, 2022
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  5. RF: move BIDSFile into bids.schema and make it load ordered entities … 

    …from schema
    @yarikoptic
    yarikoptic committed Mar 29, 2022
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  6. [DATALAD RUNCMD] isort the gitrepo we modified 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "python3 -m isort -m3 --fgw 2 --tc {outputs}",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [],
 "outputs": [
  "heudiconv/bids/*py",
  "heudiconv/bids/tests/*py"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
    @yarikoptic
    yarikoptic committed Mar 29, 2022
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  7. ENH: a little pythonisation + ensure no bad entities provided

    @yarikoptic
    yarikoptic committed Mar 29, 2022
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  8. BF+ENH: add pyyaml to depends and sort all depends

    @yarikoptic
    yarikoptic committed Mar 29, 2022
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