GFF3 of loci

Convert CRISPR loci data in CLdb to GFF3 file format for viewing features with a genome viewer (eg. jbrowse).

###GFF3 of all loci in E.col

CLdb_loci2GFF.pl -d CLdb.sqlite -name "E.coli" -loci > ecoli_loci.gff

###GFF3 of all CRISPR arrays & operons in E.col

CLdb_loci2GFF.pl -d CLdb.sqlite -name "E.coli" -o a > ecoli_array-operon.gff

###GFF3 of all spacers in FIG|2209.27

CLdb_loci2GFF.pl -d CLdb.sqlite -id 2209.27 -s > 2209.27_spacers.gff