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Add a subcommand to generate a nf-params.yml template #2362

Merged
merged 14 commits into from
Jul 19, 2023
Merged

Add a subcommand to generate a nf-params.yml template #2362

merged 14 commits into from
Jul 19, 2023
+420 −1

Commits on Jul 19, 2023

  1. add params-template subcommand

    @fbdtemme
    fbdtemme committed Jul 19, 2023
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  2. add whitespace around header and groups

    @fbdtemme
    fbdtemme committed Jul 19, 2023
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  3. reword cli help message

    @fbdtemme
    fbdtemme committed Jul 19, 2023
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  4. fix missing period

    @fbdtemme
    fbdtemme committed Jul 19, 2023
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  5. Update README.md 

    Co-authored-by: Phil Ewels <[email protected]>
    @fbdtemme @ewels
    fbdtemme and ewels committed Jul 19, 2023
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  6. rename command to create-params-file

    @fbdtemme
    fbdtemme committed Jul 19, 2023
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  7. Update README.md 

    Co-authored-by: Matthias Hörtenhuber <[email protected]>
    @fbdtemme @mashehu
    fbdtemme and mashehu committed Jul 19, 2023
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  8. improve test setup

    @fbdtemme
    fbdtemme committed Jul 19, 2023
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  9. fix old command name in cli command group

    @fbdtemme
    fbdtemme committed Jul 19, 2023
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  10. update CHANGELOG.md

    @fbdtemme
    fbdtemme committed Jul 19, 2023
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  11. remove template from function names 

    Co-authored-by: Matthias Hörtenhuber <[email protected]>
    @fbdtemme @mashehu
    fbdtemme and mashehu committed Jul 19, 2023
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  12. fix incomplete renaming

    @fbdtemme
    fbdtemme committed Jul 19, 2023
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  13. add pipeline version to params file

    @fbdtemme
    fbdtemme committed Jul 19, 2023
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  14. update tests after renaming

    @fbdtemme
    fbdtemme committed Jul 19, 2023
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