[automated] Fix code linting

nf-core · Oct 17, 2024 · c89d797 · c89d797
1 parent b292215
commit c89d797
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Showing 3 changed files with 15 additions and 53 deletions.
diff --git a/assets/schema_counts_design.json b/assets/schema_counts_design.json
@@ -11,25 +11,19 @@
                 "type": "string",
                 "pattern": "^[a-zA-Z][a-zA-Z0-9]*(?:[-_][a-zA-Z0-9]+)*$",
                 "errorMessage": "Sample name must be provided, has to start with a letter, and cannot contain spaces",
-                "meta": [
-                    "id"
-                ]
+                "meta": ["id"]
             },
             "condition": {
                 "type": "string",
                 "pattern": "^[a-zA-Z][a-zA-Z0-9]*(?:[-_][a-zA-Z0-9]+)*$",
                 "errorMessage": "Condition name must be provided, has to start with a letter, and cannot contain spaces",
-                "meta": [
-                    "condition"
-                ]
+                "meta": ["condition"]
             },
             "batch": {
                 "type": ["string", "integer"],
                 "pattern": "^[a-zA-Z0-9]*(?:[-_][a-zA-Z0-9]+)*$",
                 "errorMessage": "Batch identifier cannot contain spaces",
-                "meta": [
-                    "batch"
-                ]
+                "meta": ["batch"]
             },
             "counts_file": {
                 "type": "string",
@@ -39,9 +33,6 @@
                 "errorMessage": "Counts file must be a .csv or .txt file"
             }
         },
-        "required": [
-            "sample",
-            "condition"
-        ]
+        "required": ["sample", "condition"]
     }
 }
diff --git a/assets/schema_input.json b/assets/schema_input.json
@@ -11,25 +11,19 @@
                 "type": "string",
                 "pattern": "^[a-zA-Z][a-zA-Z0-9]*(?:[-_][a-zA-Z0-9]+)*$",
                 "errorMessage": "Sample name must be provided, has to start with a letter, and cannot contain spaces",
-                "meta": [
-                    "id"
-                ]
+                "meta": ["id"]
             },
             "condition": {
                 "type": "string",
                 "pattern": "^[a-zA-Z][a-zA-Z0-9]*(?:[-_][a-zA-Z0-9]+)*$",
                 "errorMessage": "Condition name must be provided, has to start with a letter, and cannot contain spaces",
-                "meta": [
-                    "condition"
-                ]
+                "meta": ["condition"]
             },
             "assay": {
                 "type": "string",
                 "pattern": "^[a-zA-Z][a-zA-Z0-9]*(?:[-_][a-zA-Z0-9]+)*$",
                 "errorMessage": "Assay name must be provided, has to start with a letter, and cannot contain spaces",
-                "meta": [
-                    "assay"
-                ]
+                "meta": ["assay"]
             },
             "peak_file": {
                 "type": "string",
@@ -42,33 +36,22 @@
                 "type": "boolean",
                 "default": true,
                 "errorMessage": "footprinting must be a boolean value",
-                "meta": [
-                    "footprinting"
-                ]
+                "meta": ["footprinting"]
             },
             "include_original": {
                 "type": "boolean",
                 "default": true,
                 "errorMessage": "include_original must be a boolean value",
-                "meta": [
-                    "include_original"
-                ]
+                "meta": ["include_original"]
             },
             "max_peak_gap": {
                 "type": "integer",
                 "default": 500,
                 "minimum": 0,
                 "errorMessage": "max_peak_gap must be a positive integer",
-                "meta": [
-                    "max_peak_gap"
-                ]
+                "meta": ["max_peak_gap"]
             }
         },
-        "required": [
-            "sample",
-            "condition",
-            "assay",
-            "peak_file"
-        ]
+        "required": ["sample", "condition", "assay", "peak_file"]
     }
 }
diff --git a/assets/schema_input_bam.json b/assets/schema_input_bam.json
@@ -11,25 +11,19 @@
                 "type": "string",
                 "pattern": "^[a-zA-Z][a-zA-Z0-9]*(?:[-_][a-zA-Z0-9]+)*$",
                 "errorMessage": "Sample name must be provided, has to start with a letter, and cannot contain spaces",
-                "meta": [
-                    "id"
-                ]
+                "meta": ["id"]
             },
             "condition": {
                 "type": "string",
                 "pattern": "^[a-zA-Z][a-zA-Z0-9]*(?:[-_][a-zA-Z0-9]+)*$",
                 "errorMessage": "Condition name must be provided, has to start with a letter, and cannot contain spaces",
-                "meta": [
-                    "condition"
-                ]
+                "meta": ["condition"]
             },
             "assay": {
                 "type": "string",
                 "pattern": "^[a-zA-Z][a-zA-Z0-9]*(?:[-_][a-zA-Z0-9]+)*$",
                 "errorMessage": "Assay name must be provided, has to start with a letter, and cannot contain spaces",
-                "meta": [
-                    "assay"
-                ]
+                "meta": ["assay"]
             },
             "signal": {
                 "type": "string",
@@ -46,12 +40,6 @@
                 "errorMessage": "Control file must be provided and must be a .bam file"
             }
         },
-        "required": [
-            "sample",
-            "condition",
-            "assay",
-            "signal",
-            "control"
-        ]
+        "required": ["sample", "condition", "assay", "signal", "control"]
     }
 }