Remove schema subworkflow

nf-core · Oct 16, 2024 · 232c45b · 232c45b
1 parent f2eb85a
commit 232c45b
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Showing 6 changed files with 55 additions and 326 deletions.
diff --git a/modules.json b/modules.json
@@ -8,82 +8,114 @@
                     "atlasgeneannotationmanipulation/gtf2featureannotation": {
                         "branch": "master",
                         "git_sha": "04bc484c987b523ea5420ed6bbc1fdc6d8aef751",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "bedtools/complement": {
                         "branch": "master",
                         "git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "bedtools/getfasta": {
                         "branch": "master",
                         "git_sha": "cdcdd5e3d806f0ff3983c40c69e0b07bb44ec299",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "bedtools/intersect": {
                         "branch": "master",
                         "git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "bedtools/merge": {
                         "branch": "master",
                         "git_sha": "a5377837fe9013bde89de8689829e83e84086536",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "bedtools/slop": {
                         "branch": "master",
                         "git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "bedtools/sort": {
                         "branch": "master",
                         "git_sha": "571a5feac4c9ce0a8df0bc15b94230e7f3e8db47",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "bedtools/subtract": {
                         "branch": "master",
                         "git_sha": "3b248b84694d1939ac4bb33df84bf6233a34d668",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "cat/cat": {
                         "branch": "master",
                         "git_sha": "9437e6053dccf4aafa022bfd6e7e9de67e625af8",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "deseq2/differential": {
                         "branch": "master",
                         "git_sha": "4699a675cfc36b3c3f53926afd5dc1cf2e6a780e",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "gawk": {
                         "branch": "master",
                         "git_sha": "cf3ed075695639b0a0924eb0901146df1996dc08",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "gnu/sort": {
                         "branch": "master",
                         "git_sha": "ca199cfe5aa4f1ea3c41302158f0af2cfaa58957",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "gunzip": {
                         "branch": "master",
                         "git_sha": "3a5fef109d113b4997c9822198664ca5f2716208",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "multiqc": {
                         "branch": "master",
                         "git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "samtools/faidx": {
                         "branch": "master",
                         "git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     },
                     "samtools/reheader": {
                         "branch": "master",
                         "git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
-                        "installed_by": ["modules"]
+                        "installed_by": [
+                            "modules"
+                        ]
                     }
                 }
             },
@@ -92,20 +124,19 @@
                     "utils_nextflow_pipeline": {
                         "branch": "master",
                         "git_sha": "3aa0aec1d52d492fe241919f0c6100ebf0074082",
-                        "installed_by": ["subworkflows"]
+                        "installed_by": [
+                            "subworkflows"
+                        ]
                     },
                     "utils_nfcore_pipeline": {
                         "branch": "master",
                         "git_sha": "1b6b9a3338d011367137808b49b923515080e3ba",
-                        "installed_by": ["subworkflows"]
-                    },
-                    "utils_nfschema_plugin": {
-                        "branch": "master",
-                        "git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
-                        "installed_by": ["subworkflows"]
+                        "installed_by": [
+                            "subworkflows"
+                        ]
                     }
                 }
             }
         }
     }
-}
+}
diff --git a/subworkflows/nf-core/utils_nfschema_plugin/main.nf b/subworkflows/nf-core/utils_nfschema_plugin/main.nf
diff --git a/subworkflows/nf-core/utils_nfschema_plugin/meta.yml b/subworkflows/nf-core/utils_nfschema_plugin/meta.yml
diff --git a/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test b/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test
diff --git a/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config b/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config