add exists:true to the sechma to check the file path

nf-core · Oct 18, 2024 · 5e90741 · 5e90741
1 parent f3ef6aa
commit 5e90741
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diff --git a/assets/schema_database.json b/assets/schema_database.json
@@ -45,6 +45,7 @@
             },
             "db_path": {
                 "type": "string",
+                "exists": true,
                 "format": "file-path",
                 "errorMessage": "db_path should be either a file path or a directory."
             }

diff --git a/assets/schema_input.json b/assets/schema_input.json
@@ -35,18 +35,21 @@
             },
             "fastq_1": {
                 "type": "string",
+                "exists": true,
                 "format": "file-path",
                 "pattern": "^\\S+\\.f(ast)?q\\.gz$",
                 "errorMessage": "Gzipped FastQ file for reads 1 must be provided, cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'"
             },
             "fastq_2": {
                 "type": "string",
+                "exists": true,
                 "format": "file-path",
                 "pattern": "^\\S+\\.f(ast)?q\\.gz$",
                 "errorMessage": "Gzipped FastQ file for reads 2 cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'. If not applicable, leave it empty."
             },
             "fasta": {
                 "type": "string",
+                "exists": true,
                 "format": "file-path",
                 "pattern": "^\\S+\\.(fasta|fas|fna|fa)\\.gz?$",
                 "errorMessage": "Gzipped FastA file must be provided, cannot contain spaces and must have extension '.fa.gz', 'fna.gz', 'fas.gz', or '.fasta.gz'. If not applicable, leave it empty."