Fixed lane handling

nf-core · Sep 23, 2024 · 627d368 · 627d368
1 parent e0de68f
commit 627d368
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/demultiplex.nf b/workflows/demultiplex.nf
@@ -78,7 +78,7 @@ workflow DEMULTIPLEX {
             }
             .map { file -> //build meta again from file name
                 def meta_id = (file =~ /.*\/(.*?)(\.lane|_no_adapters)/)[0][1] //extracts everything from the last "/" until ".lane" or "_no_adapters"
-                def meta_lane = (file.contains('.lane')) ? (file =~ /\.lane(\d+)/)[0][1].toInteger() : null //extracts number after ".lane" until next "_", must be int to match lane value from meta
+                def meta_lane = (file.getName().contains('.lane')) ? (file =~ /\.lane(\d+)/)[0][1].toInteger() : null //extracts number after ".lane" until next "_", must be int to match lane value from meta
                 [[id: meta_id, lane: meta_lane],file]
             }
         ch_samplesheet_new = ch_samplesheet