Set up tests

.gitignore

@@ -6,3 +6,4 @@ results/
 testing/
 testing*
 *.pyc
+.nf-test

nf-test.config

@@ -0,0 +1,8 @@
+config {
+
+    testsDir "tests"
+    workDir ".nf-test"
+    configFile "tests/nextflow.config"
+    profile "test,docker"
+
+}

tests/main.nf.test

@@ -0,0 +1,20 @@
+nextflow_pipeline {
+
+    name "Test Workflow main.nf"
+    script "main.nf"
+
+    test("Should run without failures") {
+
+        when {
+            params {
+                outdir = "tests/results"
+            }
+        }
+
+        then {
+            assert workflow.success
+        }
+
+    }
+
+}

tests/nextflow.config

@@ -0,0 +1,5 @@
+/*
+========================================================================================
+    Nextflow config file for running tests
+========================================================================================
+*/

tests/workflows/seqinspector.nf.test

@@ -0,0 +1,30 @@
+nextflow_workflow {
+
+    name "Test Workflow SEQINSPECTOR"
+    script "workflows/seqinspector.nf"
+    workflow "SEQINSPECTOR"
+
+    test("Should run without failures pipeline") {
+
+        when {
+            params {
+                // define parameters here. Example:
+                // outdir = "tests/results"
+            }
+            workflow {
+                """
+                // define inputs of the workflow here. Example:
+                // input[0] = file("https://raw.githubusercontent.com/nf-core/test-datasets/e47966b63444ec0fcdef23bfc410eeca22535ac7/testdata/MiSeq/samplesheet.csv")
+                input[0] = file("assets/samplesheet.csv")
+                """
+            }
+        }
+
+        then {
+            assert workflow.success
+            assert snapshot(workflow.out).match()
+        }
+
+    }
+
+}