update nf-test snaps

nf-core · Apr 16, 2024 · f0b309f · f0b309f
1 parent 95a9ffa
commit f0b309f
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Showing 2 changed files with 9 additions and 9 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -98,7 +98,7 @@ if(params.aligner == "cellranger") {
                 path: "${params.outdir}/${params.aligner}/count",
                 mode: params.publish_dir_mode
             ]
-            ext.args = {"--chemistry ${meta.chemistry} " + (meta.expected_cells ? "--expect-cells ${meta.expected_cells}" : '')}
+            ext.args = {"--chemistry ${meta.chemistry} --create-bam false " + (meta.expected_cells ? "--expect-cells ${meta.expected_cells}" : '')}
             time   = { check_max( 240.h  * task.attempt, 'time'    ) }
         }
     }

diff --git a/tests/main_pipeline_cellranger.test.snap b/tests/main_pipeline_cellranger.test.snap
@@ -3,13 +3,13 @@
         "content": [
             {
                 "stderr": [
-
+                    
                 ],
                 "errorReport": "",
                 "exitStatus": 0,
                 "failed": false,
                 "stdout": [
-
+                    
                 ],
                 "errorMessage": "",
                 "trace": {
@@ -22,16 +22,16 @@
             },
             "barcodes.tsv.gz:md5,fe6e51564b4405b37ca8604a844b1f2e",
             "features.tsv.gz:md5,99e453cb1443a3e43e99405184e51a5e",
-            "matrix.mtx.gz:md5,79471f700ec5bab852a960f0d1537705",
+            "matrix.mtx.gz:md5,1528b9b0fccc78dec95695928e42e710",
             "barcodes.tsv.gz:md5,77afe9a76631fc7b44236d3962a55aa5",
             "features.tsv.gz:md5,99e453cb1443a3e43e99405184e51a5e",
-            "matrix.mtx.gz:md5,e224aa759250fa5730dc069bce9be253",
+            "matrix.mtx.gz:md5,49db721ca5d5749cf11597e82a010eb6",
             "barcodes.tsv.gz:md5,85da6b6e0c78dfe81af8c07c2017ab5e",
             "features.tsv.gz:md5,99e453cb1443a3e43e99405184e51a5e",
-            "matrix.mtx.gz:md5,1bc71041a425bfcee38472bfec5997f8",
+            "matrix.mtx.gz:md5,96943587acf3356c5fa5038056c54c96",
             "barcodes.tsv.gz:md5,081f72b5252ccaf5ffd535ffbd235c4c",
             "features.tsv.gz:md5,99e453cb1443a3e43e99405184e51a5e",
-            "matrix.mtx.gz:md5,a4db04e43e650accc96361a287126a6b",
+            "matrix.mtx.gz:md5,58182db2706d532ec970526de3d3b70f",
             "Sample_X_raw_matrix.rds:md5,306a5477ace4d43d851b8389fdfeaf1f",
             "Sample_Y_raw_matrix.rds:md5,74b31532da4cae5a8197d690021d77fc",
             "Sample_X_filtered_matrix.rds:md5,f9191ba575a3ab79ada4807715f18573",
@@ -41,6 +41,6 @@
             "nf-test": "0.8.4",
             "nextflow": "23.10.1"
         },
-        "timestamp": "2024-02-14T15:10:31.638485641"
+        "timestamp": "2024-04-16T09:43:45.32298954"
     }
-}
+}