Fix numba cache dir

bin/concat_h5ad.py

@@ -1,4 +1,9 @@
 #!/usr/bin/env python
+
+# Set numba chache dir to current working directory (which is a writable mount also in containers)
+import os
+os.environ["NUMBA_CACHE_DIR"] = "."
+
 import scanpy as sc, anndata as ad, pandas as pd
 from pathlib import Path
 import argparse

bin/mtx_to_h5ad.py

@@ -1,8 +1,12 @@
 #!/usr/bin/env python
+
+# Set numba chache dir to current working directory (which is a writable mount also in containers)
+import os
+os.environ["NUMBA_CACHE_DIR"] = "."
+
 import scanpy as sc
 import pandas as pd
 import argparse
-import os
 from scipy import io
 from anndata import AnnData
 

modules/local/simpleaf_index.nf

@@ -27,6 +27,7 @@ process SIMPLEAF_INDEX {
     """
     # export required var
     export ALEVIN_FRY_HOME=.
+    export NUMBA_CACHE_DIR=.
 
     # prep simpleaf
     simpleaf set-paths