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Important! Template update for nf-core/tools v3.0.1 #1401

Merged
merged 36 commits into from
Oct 10, 2024
Merged

Important! Template update for nf-core/tools v3.0.1 #1401

merged 36 commits into from
Oct 10, 2024

Commits on Oct 8, 2024

  1. Template update for nf-core/tools version 3.0.0

    @nf-core-bot
    nf-core-bot committed Oct 8, 2024
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Commits on Oct 9, 2024

  1. Template update for nf-core/tools version 3.0.1

    @nf-core-bot
    nf-core-bot committed Oct 9, 2024
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  2. Merge branch 'dev' into nf-core-template-merge-3.0.1

    @maxulysse
    maxulysse committed Oct 9, 2024
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  3. fix merge conflicts

    @maxulysse
    maxulysse committed Oct 9, 2024
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  4. Apply suggestions from code review

    @maxulysse
    maxulysse authored Oct 9, 2024
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  5. fix nf-core lint

    @maxulysse
    maxulysse committed Oct 9, 2024
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  6. install nf-test 0.9.0

    @maxulysse
    maxulysse committed Oct 9, 2024
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  7. install nf-test once only

    @maxulysse
    maxulysse committed Oct 9, 2024
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  8. use proper Channel factory

    @maxulysse
    maxulysse committed Oct 9, 2024
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  9. rename function test

    @maxulysse
    maxulysse committed Oct 9, 2024
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  10. fix align

    @maxulysse
    maxulysse committed Oct 9, 2024
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  11. fix samplesheet usage

    @maxulysse
    maxulysse committed Oct 9, 2024
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  12. fix tests

    @maxulysse
    maxulysse committed Oct 9, 2024
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  13. fix tests

    @maxulysse
    maxulysse committed Oct 9, 2024
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  14. update CHANGELOG

    @maxulysse
    maxulysse committed Oct 9, 2024
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  15. Apply suggestions from code review

    @maxulysse
    maxulysse authored Oct 9, 2024
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  16. update test adjacent files

    @maxulysse
    maxulysse committed Oct 9, 2024
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  17. clean nftignore for kallisto

    @maxulysse
    maxulysse committed Oct 9, 2024
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  18. minor code polish

    @maxulysse
    maxulysse committed Oct 9, 2024
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  19. kallisto: update snapshots

    @maxulysse
    maxulysse committed Oct 9, 2024
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  20. update plugin version

    @maxulysse
    maxulysse committed Oct 9, 2024
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  21. update nftignore

    @maxulysse
    maxulysse committed Oct 9, 2024
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  22. update fastq_fastqc_umitools_trimgalore

    @maxulysse
    maxulysse committed Oct 9, 2024
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Commits on Oct 10, 2024

  1. update nftignore and snapshots for salmon and kallisto

    @maxulysse
    maxulysse committed Oct 10, 2024
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  2. no set -C until we fix modules upstream

    @maxulysse
    maxulysse committed Oct 10, 2024
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  3. update nftignore

    @maxulysse
    maxulysse committed Oct 10, 2024
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  4. update default tests

    @maxulysse
    maxulysse committed Oct 10, 2024
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  5. update featurecounts_group_type tests

    @maxulysse
    maxulysse committed Oct 10, 2024
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  6. update nftignore and hisat2 snapshots

    @maxulysse
    maxulysse committed Oct 10, 2024
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  7. update min_mapped_reads snapshots

    @maxulysse
    maxulysse committed Oct 10, 2024
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  8. do not snapshot the bam

    @maxulysse
    maxulysse committed Oct 10, 2024
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  9. update remove_ribo_rna tests

    @maxulysse
    maxulysse committed Oct 10, 2024
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  10. update skip_qc tests

    @maxulysse
    maxulysse committed Oct 10, 2024
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  11. update skip_trimming snapshots

    @maxulysse
    maxulysse committed Oct 10, 2024
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  12. update last snapshots

    @maxulysse
    maxulysse committed Oct 10, 2024
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  13. ignore file

    @maxulysse
    maxulysse committed Oct 10, 2024
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