Revert multiqc workaround due to fix

nf-core · Aug 21, 2024 · 4464227 · 4464227
1 parent 4a01a63
commit 4464227
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Showing 5 changed files with 12 additions and 10 deletions.
diff --git a/modules.json b/modules.json
@@ -91,8 +91,8 @@
                         "installed_by": ["modules", "quantify_pseudo_alignment"]
                     },
                     "multiqc": {
-                        "branch": "master",
-                        "git_sha": "878d2adbb911aa6e15c06a4d1e93d01bd6f26c74",
+                        "branch": "bump-multiqc",
+                        "git_sha": "717aa5a675ab1726a6374724847c4e6e1a52386e",
                         "installed_by": ["modules"]
                     },
                     "picard/markduplicates": {

diff --git a/modules/nf-core/multiqc/environment.yml b/modules/nf-core/multiqc/environment.yml
diff --git a/modules/nf-core/multiqc/main.nf b/modules/nf-core/multiqc/main.nf
diff --git a/modules/nf-core/multiqc/tests/main.nf.test.snap b/modules/nf-core/multiqc/tests/main.nf.test.snap
diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
@@ -11,13 +11,13 @@ report_section_order:
   fail_strand_check-module:
     order: 5001
   # Preprocessing and pre-alignment QC
-  fastqc:
+  fastqc_raw:
     order: 4004
   cutadapt:
     order: 4003
   fastp:
     order: 4003
-  fastqc-1:
+  fastqc_trimmed:
     order: 4002
   # Alignment
   star:
@@ -98,13 +98,15 @@ run_modules:
 
 module_order:
   - fastqc:
+      anchor: "fastqc_raw"
       name: "FastQC (raw)"
       info: "This section of the report shows FastQC results before adapter trimming."
       path_filters:
         - "*_raw*fastqc.zip"
   - cutadapt
   - fastp
   - fastqc:
+      anchor: "fastqc_trimmed"
       name: "FastQC (trimmed)"
       info: "This section of the report shows FastQC results after adapter trimming."
       path_filters: