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Include nf-tests for rsem_merge_counts module #2417

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Include nf-tests for rsem_merge_counts module

Include nf-tests for rsem_merge_counts module #2417

Run time

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Job Run time
Test HISAT2 with workflow parameters (--skip_qc)
5m 34s
Test STAR RSEM with workflow parameters (--skip_qc)
7m 22s
Test HISAT2 with workflow parameters (--hisat2_index false)
7m 56s
Check for changes
6s
Test STAR RSEM with workflow parameters (--rsem_index false)
9m 12s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
7m 47s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
3m 47s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --salmon_index false --tran...
10m 15s
Test STAR Salmon with workflow parameters (--skip_qc)
7m 57s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
7m 39s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
3m 48s
Test STAR Salmon with workflow parameters (--skip_trimming)
10m 9s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --kallisto_index false --...
10m 3s
Test STAR Salmon with workflow parameters (--gtf false)
10m 20s
Test STAR Salmon with workflow parameters (--star_index false)
10m 19s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
10m 40s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
9m 36s
Test STAR Salmon with workflow parameters (--with_umi)
11m 9s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
10m 39s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
12m 41s
Test STAR Salmon with workflow parameters (--bam_csi_index)
9m 54s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
10m 13s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
9m 56s
Test STAR Salmon with workflow parameters (--trimmer fastp)
9m 31s
RSEM_MERGE_COUNTS docker NF-23.04.0
2m 38s
confirm-pass
1s
3h 29m 12s