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Bump lots of modules so that conda versions have arm builds #3082

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Bump lots of modules so that conda versions have arm builds

Bump lots of modules so that conda versions have arm builds #3082

Re-run triggered October 21, 2024 13:06
@pinin4fjordspinin4fjords
#1422
bump_modules_for_arm
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Run tests (modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-24.04.2)
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Run tests (modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-24.04.2)
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Run tests (modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-24.04.2)
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Run tests (modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-24.04.2)
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Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-24.04.2)
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Run tests (modules/nf-core/trimgalore/tests/main.nf.test docker NF-24.04.2)
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Run tests (modules/nf-core/hisat2/align/tests/main.nf.test docker NF-24.04.2)
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Run tests (modules/nf-core/gunzip/tests/main.nf.test docker NF-24.04.2)
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Run tests (modules/nf-core/samtools/index/tests/main.nf.test docker NF-24.04.2)
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Run tests (modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-24.04.2)
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Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-24.04.2)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run tests (subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-24.04.2)
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Run tests (subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-24.04.2)
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Run tests (subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-latest-everything)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run tests (subworkflows/local/align_star/tests/main.nf.test docker NF-latest-everything)
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Run tests (subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-latest-everything)
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Run tests (tests/kallisto.nf.test docker NF-latest-everything)
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Run tests (tests/salmon.nf.test docker NF-24.04.2)
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Run tests (tests/salmon.nf.test docker NF-latest-everything)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
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Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
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Run tests (tests/hisat2.nf.test docker NF-latest-everything)
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Run tests (tests/hisat2.nf.test docker NF-24.04.2)
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Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
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Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
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Run tests (subworkflows/local/align_star/tests/main.nf.test docker NF-24.04.2)
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Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
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Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
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Run tests (tests/default.nf.test docker NF-24.04.2)
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Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run tests (tests/default.nf.test docker NF-latest-everything)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run tests (subworkflows/local/prepare_genome/tests/main.nf.test docker NF-24.04.2)
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Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run tests (subworkflows/local/prepare_genome/tests/main.nf.test docker NF-latest-everything)
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Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
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Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/