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Backport support for Graviton 4 to version 3.16.1 #3078

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Backport support for Graviton 4 to version 3.16.1

Backport support for Graviton 4 to version 3.16.1 #3078

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Job Run time
Check for changes
18s
Run tests (modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-24.04.2)
4m 13s
Run tests (modules/nf-core/fastp/tests/main.nf.test docker NF-24.04.2)
6m 28s
Run tests (modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-24.04.2)
6m 53s
Run tests (modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-24.04.2)
4m 57s
Run tests (subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-24.04.2)
5m 50s
Run tests (modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-24.04.2)
3m 11s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-24.04.2)
4m 40s
Run tests (modules/nf-core/dupradar/tests/main.nf.test docker NF-24.04.2)
5m 35s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-24.04.2)
4m 56s
Run tests (modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-24.04.2)
2m 50s
Run tests (modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-24.04.2)
3m 56s
Run tests (modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-24.04.2)
5m 9s
Run tests (modules/nf-core/kallisto/index/tests/main.nf.test docker NF-24.04.2)
3m 3s
Run tests (modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-24.04.2)
4m 40s
Run tests (modules/nf-core/samtools/index/tests/main.nf.test docker NF-24.04.2)
3m 37s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
13m 37s
Run tests (subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-24.04.2)
4m 48s
Run tests (modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-24.04.2)
3m 37s
Run tests (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-24.04.2)
5m 20s
Run tests (modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-24.04.2)
3m 10s
Run tests (modules/nf-core/cat/fastq/tests/main.nf.test docker NF-24.04.2)
4m 36s
Run tests (tests/default.nf.test docker NF-24.04.2)
13m 44s
Run tests (modules/nf-core/samtools/sort/tests/main.nf.test docker NF-24.04.2)
3m 11s
Run tests (modules/nf-core/kraken2/kraken2/tests/main.nf.test docker NF-24.04.2)
5m 13s
Run tests (subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-24.04.2)
5m 20s
Run tests (modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-24.04.2)
3m 8s
Run tests (modules/nf-core/hisat2/build/tests/main.nf.test docker NF-24.04.2)
3m 16s
Run tests (modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-24.04.2)
3m 13s
Run tests (modules/nf-core/hisat2/align/tests/main.nf.test docker NF-24.04.2)
4m 32s
Run tests (modules/nf-core/salmon/quant/tests/main.nf.test docker NF-24.04.2)
4m 13s
Run tests (modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-24.04.2)
3m 32s
Run tests (subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-24.04.2)
5m 28s
Run tests (subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-24.04.2)
6m 12s
Run tests (modules/nf-core/multiqc/tests/main.nf.test docker NF-24.04.2)
3m 58s
Run tests (modules/nf-core/salmon/index/tests/main.nf.test docker NF-24.04.2)
2m 48s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-24.04.2)
5m 12s
Run tests (modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-24.04.2)
3m 56s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
14m 19s
Run tests (subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-24.04.2)
5m 44s
Run tests (modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-24.04.2)
4m 43s
Run tests (modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-24.04.2)
3m 23s
Run tests (modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-24.04.2)
3m 33s
Run tests (modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-24.04.2)
3m 34s
Run tests (modules/nf-core/gffread/tests/main.nf.test docker NF-24.04.2)
3m 58s
Run tests (subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-24.04.2)
5m 24s
Run tests (modules/nf-core/sortmerna/tests/main.nf.test docker NF-24.04.2)
4m 11s
Run tests (modules/nf-core/trimgalore/tests/main.nf.test docker NF-24.04.2)
3m 19s
Run tests (modules/nf-core/gunzip/tests/main.nf.test docker NF-24.04.2)
6m 34s
Run tests (modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-24.04.2)
3m 34s
Run tests (subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-24.04.2)
5m 30s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
19m 54s
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
8m 3s
Run tests (modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-24.04.2)
3m 43s
Run tests (subworkflows/local/prepare_genome/tests/main.nf.test docker NF-24.04.2)
15m 19s
Run tests (modules/local/star_align_igenomes/tests/main.nf.test docker NF-24.04.2)
11m 57s
Run tests (modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-24.04.2)
3m 41s
Run tests (modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-24.04.2)
2m 52s
Run tests (modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-24.04.2)
2m 55s
Run tests (modules/nf-core/untar/tests/main.nf.test docker NF-24.04.2)
3m 31s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-24.04.2)
9m 36s
Run tests (modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-24.04.2)
2m 44s
Run tests (modules/nf-core/star/align/tests/main.nf.test docker NF-24.04.2)
11m 33s
Run tests (modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-24.04.2)
6m 43s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
14m 32s
Run tests (modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-24.04.2)
5m 1s
Run tests (modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-24.04.2)
3m 23s
Run tests (subworkflows/local/align_star/tests/main.nf.test docker NF-24.04.2)
7m 7s
Run tests (tests/salmon.nf.test docker NF-24.04.2)
7m 26s
Run tests (modules/nf-core/fastqc/tests/main.nf.test docker NF-24.04.2)
7m 32s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
10m 53s
Run tests (modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-24.04.2)
3m 46s
Run tests (modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-24.04.2)
4m 47s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-24.04.2)
3m 54s
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
14m 51s
Run tests (modules/nf-core/fq/subsample/tests/main.nf.test docker NF-24.04.2)
6m 35s
Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-24.04.2)
4m 16s
Run tests (modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-24.04.2)
3m 14s
Run tests (modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-24.04.2)
4m 54s
Run tests (modules/nf-core/umitools/extract/tests/main.nf.test docker NF-24.04.2)
5m 55s
Run tests (modules/nf-core/samtools/stats/tests/main.nf.test docker NF-24.04.2)
5m 41s
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
15m 15s
Run tests (modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-latest-everything)
4m 13s
Run tests (modules/nf-core/fastp/tests/main.nf.test docker NF-latest-everything)
5m 45s
Run tests (modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-latest-everything)
8m 15s
Run tests (modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-latest-everything)
3m 3s
Run tests (subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-latest-everything)
4m 52s
Run tests (modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-latest-everything)
2m 56s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything)
3m 16s
Run tests (modules/nf-core/dupradar/tests/main.nf.test docker NF-latest-everything)
3m 30s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything)
4m 44s
Run tests (modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-latest-everything)
5m 40s
Run tests (modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-latest-everything)
3m 56s
Run tests (modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-latest-everything)
2m 59s
Run tests (modules/nf-core/kallisto/index/tests/main.nf.test docker NF-latest-everything)
3m 24s
Run tests (modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything)
2m 42s
Run tests (modules/nf-core/samtools/index/tests/main.nf.test docker NF-latest-everything)
5m 37s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
13m 35s
Run tests (subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-latest-everything)
6m 35s
Run tests (modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-latest-everything)
3m 9s
Run tests (subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything)
2m 59s
Run tests (modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-latest-everything)
5m 8s
Run tests (modules/nf-core/cat/fastq/tests/main.nf.test docker NF-latest-everything)
4m 23s
Run tests (tests/default.nf.test docker NF-latest-everything)
14m 52s
Run tests (modules/nf-core/samtools/sort/tests/main.nf.test docker NF-latest-everything)
3m 21s
Run tests (modules/nf-core/kraken2/kraken2/tests/main.nf.test docker NF-latest-everything)
3m 17s
Run tests (subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-latest-everything)
3m 22s
Run tests (modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-latest-everything)
8m 28s
Run tests (modules/nf-core/hisat2/build/tests/main.nf.test docker NF-latest-everything)
3m 18s
Run tests (modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-latest-everything)
3m 3s
Run tests (modules/nf-core/hisat2/align/tests/main.nf.test docker NF-latest-everything)
4m 38s
Run tests (modules/nf-core/salmon/quant/tests/main.nf.test docker NF-latest-everything)
6m 35s
Run tests (modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-latest-everything)
4m 9s
Run tests (subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-latest-everything)
5m 50s
Run tests (subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-latest-everything)
6m 12s
Run tests (modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything)
5m 26s
Run tests (modules/nf-core/salmon/index/tests/main.nf.test docker NF-latest-everything)
3m 14s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything)
3m 46s
Run tests (modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-latest-everything)
3m 56s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)
10m 51s
Run tests (subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-latest-everything)
4m 21s
Run tests (modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-latest-everything)
3m 10s
Run tests (modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-latest-everything)
4m 28s
Run tests (modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-latest-everything)
3m 31s
Run tests (modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-latest-everything)
3m 22s
Run tests (modules/nf-core/gffread/tests/main.nf.test docker NF-latest-everything)
3m 35s
Run tests (subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-latest-everything)
3m 53s
Run tests (modules/nf-core/sortmerna/tests/main.nf.test docker NF-latest-everything)
3m 55s
Run tests (modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything)
5m 7s
Run tests (modules/nf-core/gunzip/tests/main.nf.test docker NF-latest-everything)
3m 1s
Run tests (modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-latest-everything)
4m 28s
Run tests (subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-latest-everything)
3m 55s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
20m 21s
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
7m 10s
Run tests (modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-latest-everything)
5m 24s
Run tests (subworkflows/local/prepare_genome/tests/main.nf.test docker NF-latest-everything)
13m 58s
Run tests (modules/local/star_align_igenomes/tests/main.nf.test docker NF-latest-everything)
13m 54s
Run tests (modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-latest-everything)
3m 10s
Run tests (modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-latest-everything)
4m 38s
Run tests (modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-latest-everything)
2m 47s
Run tests (modules/nf-core/untar/tests/main.nf.test docker NF-latest-everything)
5m 16s
Run tests (subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything)
6m 54s
Run tests (modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-latest-everything)
4m 46s
Run tests (modules/nf-core/star/align/tests/main.nf.test docker NF-latest-everything)
11m 37s
Run tests (modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-latest-everything)
3m 45s
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
13m 12s
Run tests (modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-latest-everything)
4m 22s
Run tests (modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-latest-everything)
3m 47s
Run tests (subworkflows/local/align_star/tests/main.nf.test docker NF-latest-everything)
7m 5s
Run tests (tests/salmon.nf.test docker NF-latest-everything)
9m 28s
Run tests (modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything)
5m 29s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
11m 18s
Run tests (modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-latest-everything)
3m 26s
Run tests (modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-latest-everything)
2m 41s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything)
3m 15s
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
12m 54s
Run tests (modules/nf-core/fq/subsample/tests/main.nf.test docker NF-latest-everything)
4m 58s
Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-latest-everything)
4m 15s
Run tests (modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-latest-everything)
4m 25s
Run tests (modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-latest-everything)
5m 11s
Run tests (modules/nf-core/umitools/extract/tests/main.nf.test docker NF-latest-everything)
3m 36s
Run tests (modules/nf-core/samtools/stats/tests/main.nf.test docker NF-latest-everything)
3m 9s
Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
15m 21s
confirm-pass
1s
15h 44m 57s