nf-core/rnafusion:1.2.0

[1.2.0] nfcore/rnafusion - 2020/07/15

• Fusion gene detection tools:
  • Arriba v1.2.0
  • Ericscript v0.5.5
  • Fusioncatcher v1.20
  • Pizzly v0.37.3
  • Squid v1.5
  • STAR-Fusion v1.8.1
• Visualization tools:
  • Arriba v1.2.0
  • FusionInspector v2.2.1
• Other tools:
  • fusion-report v2.1.3
  • FastQ v0.11.8
  • MultiQC v1.7
  • STAR aligner v2.7.1a

Added

• Added social preview image #107
• Simplified running the pipeline, better documentation

Changed

• Upgrade fusion-report v2.1.2 to fusion-report v2.1.3
• Upgrade fusion-report v2.1.1 to fusion-report v2.1.2
• Upgrade fusion-report v2.1.0 to fusion-report v2.1.1
• Upgrade Arriba v1.1.0 to Arriba v1.2.0
• Upgrade fusion-report v2.0.2 to fusion-report v2.1.0

Fixed

• Missing strip-components in download-references.nf/star-fusion #148
• Missing version prefix for cdna #143
• samtools missing header in empty file for FusionInspector ref
• Removed profile from helper scripts #139
• Wrong url path for Pfam-A.hmm.gz #140

Removed

• Removed scripts/download-singularity-img.sh and download-singularity-img.nf as they are not necessary any more