Releases
1.1.0
v1.1.0 - 2020/02/10
Fusion gene detection tools:
Arriba v1.1.0
Ericscript v0.5.5
Fusioncatcher v1.20
Pizzly v0.37.3
Squid v1.5
STAR-Fusion v1.6.0
Visualization tools:
Arriba v1.1.0
FusionInspector v1.3.1
Other tools:
fusion-report v2.0.1
FastQ v0.11.8
MultiQC v1.7
STAR aligner v2.7.0f
Added
Added Arriba 1.1.0
#63
Added Batch mode #54
Changed
Updated examples and configurations
Upgraded fusion-report v1.0.0
to fusion-report v2.0.1
Divided running_tools
into fusion and visualization tools
Updated STAR
in Squid
, Fusion-Inspector
version to 2.7.0f
Upgraded STAR-Fusion v1.5.0
to STAR-Fusion v1.6.0
#83
Parameter igenomesIgnore
renamed to igenome
#81
Finished STAR-Fusion file renaming #18
Updated logos
Updated to nf-core 1.8
TEMPLATE
Fixed
iGenomes optional, but not really #91
Updated fusioncatcher
to latest 1.20
version also solving #95
Removed
Variables pizzly_fasta
and pizzly_gtf
have been removed and replaced with transcript
and gtf
Jenkisfile
, test configuration, pylintrc configuration
Removed igenomes.config
because the pipeline only supports Ensembl
version
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