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zachary-foster committed Jul 29, 2024
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Expand Up @@ -71,7 +71,9 @@ This ensures that the pipeline runs on AWS, has sensible resource allocation def

## Documentation

The nf-core/pathogensurveillance pipeline comes with documentation about the pipeline [usage](https://nf-co.re/pathogensurveillance/usage), [parameters](https://nf-co.re/pathogensurveillance/parameters) and [output](https://nf-co.re/pathogensurveillance/output).
Documentation is currently under development, but can be found here:

https://grunwaldlab.github.io/pathogensurveillance_documentation

### Input format

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