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Ci_test_branch_nf-core #119

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wants to merge 105 commits into from
Closed

Ci_test_branch_nf-core #119

wants to merge 105 commits into from

Commits on Jun 26, 2024

  1. Test assertion for model info

    @tillenglert
    tillenglert committed Jun 26, 2024
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  2. bugfix snapshot

    @tillenglert
    tillenglert committed Jun 26, 2024
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  3. missed a comma

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    tillenglert committed Jun 26, 2024
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  4. nf-test assertions test_all

    @tillenglert
    tillenglert committed Jun 26, 2024
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  5. spacing issue

    @tillenglert
    tillenglert committed Jun 26, 2024
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  6. test assertions test_assembly_only

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    tillenglert committed Jun 26, 2024
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Commits on Jun 27, 2024

  1. missed some comma

    @tillenglert
    tillenglert committed Jun 27, 2024
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  2. more comma errors

    @tillenglert
    tillenglert committed Jun 27, 2024
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  3. Remove changing md5sums

    @tillenglert
    tillenglert committed Jun 27, 2024
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  4. sort alleles before assigning id

    @tillenglert
    tillenglert committed Jun 27, 2024
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  5. Update snapshots and files according to sorted alleles

    @tillenglert
    tillenglert committed Jun 27, 2024
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  6. Assertions test_bins_only

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    tillenglert committed Jun 27, 2024
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  7. Assertions test_coassembly

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    tillenglert committed Jun 27, 2024
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  8. assertions test_mhcflurry

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    tillenglert committed Jun 27, 2024
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  9. Assertions mhcnuggets1

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    tillenglert committed Jun 27, 2024
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  10. Assertions test_mhcnuggets_2

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    tillenglert committed Jun 27, 2024
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  11. Assertions test all pep lengths

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    tillenglert committed Jun 27, 2024
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  12. Assertions test_mouse

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    tillenglert committed Jun 27, 2024
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  13. Assertions test_taxa

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    tillenglert committed Jun 27, 2024
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  14. Assertions test_specific_assembly

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    tillenglert committed Jun 27, 2024
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Commits on Jun 28, 2024

  1. Assertions test

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    tillenglert committed Jun 28, 2024
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Commits on Jul 1, 2024

  1. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 1, 2024
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  2. fix entrez tests

    @tillenglert
    tillenglert committed Jul 1, 2024
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  3. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 1, 2024
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  4. Merge branch 'dev' into nf-test_assertions

    @tillenglert
    tillenglert committed Jul 1, 2024
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  5. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 1, 2024
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  6. bugfix tests

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    tillenglert committed Jul 1, 2024
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  7. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 1, 2024
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  8. fix test_mouse copy/paste mistake

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    tillenglert committed Jul 1, 2024
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  9. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 1, 2024
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  10. remove double log in test_mouse

    @tillenglert
    tillenglert committed Jul 1, 2024
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  11. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 1, 2024
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  12. fix test_mouse and test_all snapshot copy paste error

    @tillenglert
    tillenglert committed Jul 1, 2024
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  13. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 1, 2024
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  14. test_mouse and test_all overlooked a comma

    @tillenglert
    tillenglert committed Jul 1, 2024
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  15. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 1, 2024
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  16. test if md5sum was just incorrect

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    tillenglert committed Jul 1, 2024
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  17. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 1, 2024
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  18. Revert "test if md5sum was just incorrect" 

    This reverts commit 2fb6162.
    @tillenglert
    tillenglert committed Jul 1, 2024
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  19. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 1, 2024
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Commits on Jul 10, 2024

  1. fix sorting and gzip diffs between runs

    @tillenglert
    tillenglert committed Jul 10, 2024
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  2. Update all tests

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    tillenglert committed Jul 10, 2024
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  3. Fix sorting and gzip diffs between runs

    @tillenglert
    tillenglert committed Jul 10, 2024
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  4. Update nf-test profiles

    @tillenglert
    tillenglert committed Jul 10, 2024
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  5. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 10, 2024
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  6. Update snaps of standard tests

    @tillenglert
    tillenglert committed Jul 10, 2024
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  7. mouse_all_pep_lengths

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    tillenglert committed Jul 10, 2024
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  8. Update snapshots for all tests

    @tillenglert
    tillenglert committed Jul 10, 2024
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  9. fix incoming sorting of prediction merge

    @tillenglert
    tillenglert committed Jul 10, 2024
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  10. Update nf-tests for syfpeithi predictions

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    tillenglert committed Jul 10, 2024
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Commits on Jul 11, 2024

  1. Update snapshots of syfpeithi prediction tests

    @tillenglert
    tillenglert committed Jul 11, 2024
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  2. Update mhcflurry and mhcnuggets predictions

    @tillenglert
    tillenglert committed Jul 11, 2024
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  3. Update snapshots for mhcflurry and mhcnuggets predictions

    @tillenglert
    tillenglert committed Jul 11, 2024
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  4. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 11, 2024
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  5. Sort also entities

    @tillenglert
    tillenglert committed Jul 11, 2024
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  6. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 11, 2024
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  7. Update snaps after sorting commit

    @tillenglert
    tillenglert committed Jul 11, 2024
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  8. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 11, 2024
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  9. update test all

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    tillenglert committed Jul 11, 2024
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  10. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 11, 2024
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  11. fix sorting of entities again and add entrez sorting

    @tillenglert
    tillenglert committed Jul 11, 2024
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  12. Update all tests again for new sorting

    @tillenglert
    tillenglert committed Jul 11, 2024
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  13. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 11, 2024
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  14. Again better sorting as many duplicate numbers within one column

    @tillenglert
    tillenglert committed Jul 11, 2024
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  15. Update test snapshots

    @tillenglert
    tillenglert committed Jul 11, 2024
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  16. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 11, 2024
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Commits on Jul 12, 2024

  1. Added the same sorting for entrez downloads

    @tillenglert
    tillenglert committed Jul 12, 2024
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  2. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 12, 2024
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  3. update snapshots of entrez tests

    @tillenglert
    tillenglert committed Jul 12, 2024
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  4. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 12, 2024
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  5. fix sorting of entities (indent error and merging dfs)

    @tillenglert
    tillenglert committed Jul 12, 2024
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  6. Update all snapshots

    @tillenglert
    tillenglert committed Jul 12, 2024
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  7. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 12, 2024
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Commits on Jul 15, 2024

  1. fix generation of protein and entity ids and refactor script

    @tillenglert
    tillenglert committed Jul 15, 2024
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  2. Update snapshots

    @tillenglert
    tillenglert committed Jul 15, 2024
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  3. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 15, 2024
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  4. make nf-test verbose

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    tillenglert committed Jul 15, 2024
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Commits on Jul 16, 2024

  1. Update snapshots

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    tillenglert committed Jul 16, 2024
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  2. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 16, 2024
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Commits on Jul 17, 2024

  1. Update sorting of proetins/entities and new way of generating ids con… 

    …sidering multiple occurences
    @tillenglert
    tillenglert committed Jul 17, 2024
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  2. fix multiplets of index

    @tillenglert
    tillenglert committed Jul 17, 2024
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  3. Update snapshots

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    tillenglert committed Jul 17, 2024
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  4. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 17, 2024
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  5. sort also peptides after generation (not full table)

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    tillenglert committed Jul 17, 2024
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  6. sort taxids in download proteins.log

    @tillenglert
    tillenglert committed Jul 17, 2024
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  7. Update snapshots

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    tillenglert committed Jul 17, 2024
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  8. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

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    tillenglert committed Jul 17, 2024
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Commits on Jul 18, 2024

  1. fix test mouse

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    tillenglert committed Jul 18, 2024
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  2. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 18, 2024
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  3. Update sorting for peptides/proteins/entities

    @tillenglert
    tillenglert committed Jul 18, 2024
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  4. fix index bug

    @tillenglert
    tillenglert committed Jul 18, 2024
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  5. fi generate peptides script

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    tillenglert committed Jul 18, 2024
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  6. remove index from peptides.tsv.gz

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    tillenglert committed Jul 18, 2024
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  7. Update snapshots

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    tillenglert committed Jul 18, 2024
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  8. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 18, 2024
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  9. update snapshots of failed tests

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    tillenglert committed Jul 18, 2024
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  10. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Jul 18, 2024
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  11. nf-test assertions

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    tillenglert committed Jul 18, 2024
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  12. Add nf-test snapshots

    @tillenglert
    tillenglert committed Jul 18, 2024
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Commits on Jul 25, 2024

  1. Prior Commit to test

    @tillenglert
    tillenglert committed Jul 25, 2024
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Commits on Aug 5, 2024

  1. testing branch commits

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    tillenglert committed Aug 5, 2024
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  2. Merge branch 'testing' into nf-test_assertions

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    tillenglert committed Aug 5, 2024
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  3. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Aug 5, 2024
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  4. reset concat_tsv.py

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    tillenglert committed Aug 5, 2024
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  5. Merge branch 'nf-test_assertions' into ci_test_branch_nf-core

    @tillenglert
    tillenglert committed Aug 5, 2024
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