testing branch commits

nf-core · Aug 5, 2024 · dc0969a · dc0969a
1 parent 6818c98
commit dc0969a
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Showing 15 changed files with 97 additions and 97 deletions.
diff --git a/bin/download_proteins_entrez.py b/bin/download_proteins_entrez.py
@@ -307,7 +307,7 @@ def main(args=None):
     # some proteins, such as 487413233, occur within multiple sequences of the assembly!
     # -> assembly only listed once!
 
-    proteinIds = list(dict_proteinId_assemblyIds.keys())
+    proteinIds = sorted(list(dict_proteinId_assemblyIds.keys()))
 
     print("# proteins (unique): ", len(proteinIds))
     # -> # proteins with refseq source (<= # IPG proteins)
@@ -394,7 +394,7 @@ def main(args=None):
     for proteinId in proteinIds:
         accVersion = dict_protein_uid_acc[proteinId]
         # write out protein_tmp_id, entity_name (taxon_id)
-        for assemblyId in dict_proteinId_assemblyIds[proteinId]:
+        for assemblyId in sorted(dict_proteinId_assemblyIds[proteinId]):
             taxId = dict_assemblyId_taxId[assemblyId]
             print(accVersion, taxId, sep="\t", file=args.entities_proteins, flush=True)
 

diff --git a/bin/generate_peptides.py b/bin/generate_peptides.py
@@ -159,7 +159,7 @@ def main(args=None):
                 results["count"] = pd.to_numeric(results["count"], downcast="unsigned")
                 # prepare df for joining
                 results.set_index("peptide_sequence", inplace=True)
-                results.sort_index(inplace=True)
+                results.sort_index(inplace=True, kind="stable")
 
                 unique_peptides = pd.DataFrame(index=results.index.drop_duplicates())
                 unique_peptides["peptide_id"] = range(id_counter, id_counter + len(unique_peptides))

diff --git a/bin/generate_protein_and_entity_ids.py b/bin/generate_protein_and_entity_ids.py
@@ -150,7 +150,7 @@ def main(args=None):
                         # (i.e. microbiome_bare_id) and assign the corresponding microbiome_id to the entities
                         for microbiome_id in microbiomes.groupby("microbiome_bare_id").get_group(microbiome_bare_id)[
                             "microbiome_id"
-                        ]:
+                        ].sort_values():
                             entities = pd.DataFrame()
                             entities = proteins[["entity_name"]].drop_duplicates()
                             entities["entity_id"] = range(next_entity_id, next_entity_id + len(entities))

diff --git a/tests/pipeline/test.nf.test.snap b/tests/pipeline/test.nf.test.snap
@@ -4,23 +4,23 @@
             "alleles.tsv:md5,77994270b1eab3e8363c90d8d09780fa",
             "conditions_alleles.tsv:md5,e865774e32935a69306461ff47428aa8",
             "conditions.tsv:md5,a6fe5daaf11a90b61c83c9934969c52c",
-            "entities_proteins.tsv:md5,40559463e23017a527de4a0d44029762",
-            "entities.tsv:md5,57b7ddd2bbc0ae2f577e53ebfee0bed9",
+            "entities_proteins.tsv:md5,fd4cbfeca8e8f176c9e2f7aff39921bf",
+            "entities.tsv:md5,beb0a0fca43b5511cdabaf24bcc9113a",
             "microbiomes_entities.no_weights.tsv:md5,4d45837586c7c6dc4a19b41735215b01",
             "microbiomes_entities.nucl.tsv:md5,f5a3ff3cc1f8100f56238b9fab405e66",
-            "microbiomes_entities.tsv:md5,f8d9569231eeee796b23e250b37ea2ff",
+            "microbiomes_entities.tsv:md5,ea5c9629387ee19ccc485af0157a922c",
             "microbiomes.tsv:md5,20f141ba0c97325e9d99a9c0765f9a37",
-            "proteins_peptides.tsv:md5,40b02b3372c1cbfe7197f5440e724a24",
-            "peptides.tsv.gz:md5,b776a0ad7d110f8984dc43f74f2f5f2a",
-            "proteins.tsv.gz:md5,2a3e88df7aaa7c92c043671d4c823b75",
-            "predictions.tsv.gz:md5,3c86baab1aa53a295c9fe14f65aa1259",
+            "proteins_peptides.tsv:md5,e4d6b0199769075ff20c8eeca1485852",
+            "peptides.tsv.gz:md5,66f6ceef1d5212d061b46c90703282d9",
+            "proteins.tsv.gz:md5,3b397fc51074066efe2d31a5aff2abe3",
+            "predictions.tsv.gz:md5,a50679d98e43e09858bf5f29ed222cd2",
             "stats.txt:md5,83204291158696ce5d19c4e976f38efe"
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.04.3"
         },
-        "timestamp": "2024-07-18T11:22:51.147921797"
+        "timestamp": "2024-08-02T07:24:38.491278622"
     },
     "logs": {
         "content": [

diff --git a/tests/pipeline/test_all.nf.test.snap b/tests/pipeline/test_all.nf.test.snap
@@ -14,23 +14,23 @@
             "alleles.tsv:md5,77994270b1eab3e8363c90d8d09780fa",
             "conditions_alleles.tsv:md5,0e992c19471bb56c9b6e6a6f71302742",
             "conditions.tsv:md5,87707cd0dee14b0ca4face090ba9dce9",
-            "entities_proteins.tsv:md5,6eb14bc6f5a22a56244897e3c37f7698",
-            "entities.tsv:md5,243f199fd2cb7d9ff8e0c416865f8334",
-            "microbiomes_entities.no_weights.tsv:md5,b62d2213adce7c6111056d8181fe6b2c",
+            "entities_proteins.tsv:md5,57a704e833a65a1809c369452864e241",
+            "entities.tsv:md5,b7d3d019c258859c93bbc15095d304f1",
+            "microbiomes_entities.no_weights.tsv:md5,977da228f562b386b0f84fc718cc22e9",
             "microbiomes_entities.nucl.tsv:md5,aa0d4cc3546508c8e5b81bc9b4b16e39",
-            "microbiomes_entities.tsv:md5,64b5e7a2c23009f9ab54b5667cd45efb",
+            "microbiomes_entities.tsv:md5,03309271d7a983c7b4a5c73418676bbc",
             "microbiomes.tsv:md5,70871c8b3023f5a8412c05f4a69dda2f",
-            "proteins_peptides.tsv:md5,37a4c26c385c2189457aa37430c15eb4",
-            "peptides.tsv.gz:md5,2956eeef0ce98f2af1e94ec3f48caccf",
-            "proteins.tsv.gz:md5,5628f70522e8696a90d49ccf989e0d1b",
-            "predictions.tsv.gz:md5,024939bcd5a845c02d28b27668e69c91",
+            "proteins_peptides.tsv:md5,aff145bbff9f962891db2c2a540242c4",
+            "peptides.tsv.gz:md5,36aba6d50b1aad95859a547b06d04fc5",
+            "proteins.tsv.gz:md5,027823577635c591b58326410b039b32",
+            "predictions.tsv.gz:md5,d3b36995f3b4027d1a14e726a0acc6c2",
             "stats.txt:md5,896155e0f043f30bd71c38c8ee7b466c"
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.04.3"
         },
-        "timestamp": "2024-07-18T14:41:01.231189333"
+        "timestamp": "2024-08-02T07:59:44.990798256"
     },
     "logs": {
         "content": [

diff --git a/tests/pipeline/test_assembly_only.nf.test.snap b/tests/pipeline/test_assembly_only.nf.test.snap
@@ -4,23 +4,23 @@
             "alleles.tsv:md5,77994270b1eab3e8363c90d8d09780fa",
             "conditions_alleles.tsv:md5,9db7e0afc739b23c430877e336b0143f",
             "conditions.tsv:md5,a6fe5daaf11a90b61c83c9934969c52c",
-            "entities_proteins.tsv:md5,20fa4e2263edf5875a55f668bfd54255",
-            "entities.tsv:md5,03eb30795257d5e6a0a52bdfc09481fd",
+            "entities_proteins.tsv:md5,2ba821a04755841dc6f116965f853f40",
+            "entities.tsv:md5,61f364c97c883f45663ae27d115b229f",
             "microbiomes_entities.no_weights.tsv:md5,bd449dafeb86c374552f2e22a9780b19",
             "microbiomes_entities.nucl.tsv:md5,3888070b634251c0ae3e9fd4857140d7",
-            "microbiomes_entities.tsv:md5,f93b40a413fde8dd0a10712270c1a5f0",
+            "microbiomes_entities.tsv:md5,6cef150e7f5fc2f3320d9a93da00f5de",
             "microbiomes.tsv:md5,3d597aec25752f7ca83436b31bfaa128",
-            "proteins_peptides.tsv:md5,d3643f39837bc11a4984fa5260c2820f",
-            "peptides.tsv.gz:md5,afb2ba3ea67d4affb72d6e7f6451d45c",
+            "proteins_peptides.tsv:md5,c2a16b2d30c9cf5ea52207dd799b4603",
+            "peptides.tsv.gz:md5,dd0f94bea5079df8ef06895de255038b",
             "proteins.tsv.gz:md5,104b786dfa89e183a46e29f1f37f17de",
-            "predictions.tsv.gz:md5,bfff151d9a6dc15006a91c8fd7feddcc",
+            "predictions.tsv.gz:md5,98eeb5672f338ad5e8de7e2047261037",
             "stats.txt:md5,d138e30d814db5203a789b7eddd04732"
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.04.3"
         },
-        "timestamp": "2024-07-18T08:16:13.284036932"
+        "timestamp": "2024-08-01T12:28:55.298980309"
     },
     "logs": {
         "content": [

diff --git a/tests/pipeline/test_bins_only.nf.test.snap b/tests/pipeline/test_bins_only.nf.test.snap
@@ -4,23 +4,23 @@
             "alleles.tsv:md5,77994270b1eab3e8363c90d8d09780fa",
             "conditions_alleles.tsv:md5,9db7e0afc739b23c430877e336b0143f",
             "conditions.tsv:md5,5b04349198a406fc16760c7e8808bb23",
-            "entities_proteins.tsv:md5,58c51a20d57c93252d1bdf1469916a6d",
-            "entities.tsv:md5,4a739da6f90ba23b83f37e655147569e",
+            "entities_proteins.tsv:md5,20e495ff06ccacb0f81dbd65e556fc83",
+            "entities.tsv:md5,7a472316b8e96e9b12d7ca3ff6a88d39",
             "microbiomes_entities.no_weights.tsv:md5,bf3ff9d0390b49c6ecafd89c93909b67",
             "microbiomes_entities.nucl.tsv:md5,84b6b907695caaddc959682504749832",
             "microbiomes_entities.tsv:md5,2f40573eb52f3d823aad2f09a639eee2",
             "microbiomes.tsv:md5,3f58c3029d21a59316861c28af4361d1",
-            "proteins_peptides.tsv:md5,1efa2eb7dcf90e4b6496d83543f86ecc",
-            "peptides.tsv.gz:md5,eb5ce3f59f7536ad1ecc96b136d0a10f",
-            "proteins.tsv.gz:md5,3771dbafc5d6dffa6381ec8dc5b2f69e",
-            "predictions.tsv.gz:md5,d15c308bf9783a3008a2cc4125665dd3",
+            "proteins_peptides.tsv:md5,50df6a9278679870190795d7b7968113",
+            "peptides.tsv.gz:md5,34497a1a57af3c3e48fceb762cf94f75",
+            "proteins.tsv.gz:md5,1ae4d6be0e8bc4beb3d225aed3379d1c",
+            "predictions.tsv.gz:md5,1dd8ab58446c326432beadb44a0b327a",
             "stats.txt:md5,62d598a845aff61f2be843daa250f485"
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.04.3"
         },
-        "timestamp": "2024-07-18T11:59:48.935446889"
+        "timestamp": "2024-08-01T13:39:59.996820893"
     },
     "logs": {
         "content": [

diff --git a/tests/pipeline/test_coassembly.nf.test.snap b/tests/pipeline/test_coassembly.nf.test.snap
@@ -4,23 +4,23 @@
             "alleles.tsv:md5,77994270b1eab3e8363c90d8d09780fa",
             "conditions_alleles.tsv:md5,ad6438cc0e62033f39629d7d002169b5",
             "conditions.tsv:md5,092aba068d94feb11b61a22d694359d7",
-            "entities_proteins.tsv:md5,40559463e23017a527de4a0d44029762",
-            "entities.tsv:md5,57b7ddd2bbc0ae2f577e53ebfee0bed9",
-            "microbiomes_entities.no_weights.tsv:md5,4f01d93b99cae67bc21a646ea4ee0a06",
+            "entities_proteins.tsv:md5,522e78ac27cbbc30e0a40fa316ee93c5",
+            "entities.tsv:md5,a3a3d919964f1dec57abbae3c74fb8f7",
+            "microbiomes_entities.no_weights.tsv:md5,45512c04e01b2f652b60c5438377411e",
             "microbiomes_entities.nucl.tsv:md5,2f884256b54995a265af83b2eb68e773",
-            "microbiomes_entities.tsv:md5,6e0af270f7dc6a245eb7f75f6cd475f5",
+            "microbiomes_entities.tsv:md5,134661aa3d07b62ccd0cd242c4e8fe6b",
             "microbiomes.tsv:md5,b89503022fcbd9b7d7f9eefe7cbccf0f",
-            "proteins_peptides.tsv:md5,40b02b3372c1cbfe7197f5440e724a24",
-            "peptides.tsv.gz:md5,b776a0ad7d110f8984dc43f74f2f5f2a",
-            "proteins.tsv.gz:md5,2a3e88df7aaa7c92c043671d4c823b75",
-            "predictions.tsv.gz:md5,227c6c6dd1b92e40757e1f12bd60512b",
+            "proteins_peptides.tsv:md5,ce3ba728c26a7a6866ecbfc11946c1cc",
+            "peptides.tsv.gz:md5,66f6ceef1d5212d061b46c90703282d9",
+            "proteins.tsv.gz:md5,e8a2211019ca7b516ccfa5313cb3d2de",
+            "predictions.tsv.gz:md5,bf3a26621094771540cd9b4642eb2f81",
             "stats.txt:md5,f2957aced6994532212f0d25b3efba98"
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.04.3"
         },
-        "timestamp": "2024-07-18T14:04:13.49212786"
+        "timestamp": "2024-08-02T10:23:41.546325795"
     },
     "logs": {
         "content": [

diff --git a/tests/pipeline/test_mhcflurry.nf.test.snap b/tests/pipeline/test_mhcflurry.nf.test.snap
@@ -4,23 +4,23 @@
             "alleles.tsv:md5,77994270b1eab3e8363c90d8d09780fa",
             "conditions_alleles.tsv:md5,9db7e0afc739b23c430877e336b0143f",
             "conditions.tsv:md5,a6fe5daaf11a90b61c83c9934969c52c",
-            "entities_proteins.tsv:md5,20fa4e2263edf5875a55f668bfd54255",
-            "entities.tsv:md5,03eb30795257d5e6a0a52bdfc09481fd",
+            "entities_proteins.tsv:md5,2ba821a04755841dc6f116965f853f40",
+            "entities.tsv:md5,61f364c97c883f45663ae27d115b229f",
             "microbiomes_entities.no_weights.tsv:md5,bd449dafeb86c374552f2e22a9780b19",
             "microbiomes_entities.nucl.tsv:md5,3888070b634251c0ae3e9fd4857140d7",
-            "microbiomes_entities.tsv:md5,f93b40a413fde8dd0a10712270c1a5f0",
+            "microbiomes_entities.tsv:md5,6cef150e7f5fc2f3320d9a93da00f5de",
             "microbiomes.tsv:md5,3d597aec25752f7ca83436b31bfaa128",
-            "proteins_peptides.tsv:md5,d3643f39837bc11a4984fa5260c2820f",
-            "peptides.tsv.gz:md5,afb2ba3ea67d4affb72d6e7f6451d45c",
+            "proteins_peptides.tsv:md5,c2a16b2d30c9cf5ea52207dd799b4603",
+            "peptides.tsv.gz:md5,dd0f94bea5079df8ef06895de255038b",
             "proteins.tsv.gz:md5,104b786dfa89e183a46e29f1f37f17de",
-            "predictions.tsv.gz:md5,14e08243d25907c53182bfeff23361f1",
+            "predictions.tsv.gz:md5,ac12cfb575078de97c490487d86813ef",
             "stats.txt:md5,d138e30d814db5203a789b7eddd04732"
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.04.3"
         },
-        "timestamp": "2024-07-18T08:42:10.642128393"
+        "timestamp": "2024-08-01T13:55:42.000764934"
     },
     "logs": {
         "content": [

diff --git a/tests/pipeline/test_mhcnuggets_1.nf.test.snap b/tests/pipeline/test_mhcnuggets_1.nf.test.snap
@@ -4,23 +4,23 @@
             "alleles.tsv:md5,77994270b1eab3e8363c90d8d09780fa",
             "conditions_alleles.tsv:md5,9db7e0afc739b23c430877e336b0143f",
             "conditions.tsv:md5,a6fe5daaf11a90b61c83c9934969c52c",
-            "entities_proteins.tsv:md5,20fa4e2263edf5875a55f668bfd54255",
-            "entities.tsv:md5,03eb30795257d5e6a0a52bdfc09481fd",
+            "entities_proteins.tsv:md5,2ba821a04755841dc6f116965f853f40",
+            "entities.tsv:md5,61f364c97c883f45663ae27d115b229f",
             "microbiomes_entities.no_weights.tsv:md5,bd449dafeb86c374552f2e22a9780b19",
             "microbiomes_entities.nucl.tsv:md5,3888070b634251c0ae3e9fd4857140d7",
-            "microbiomes_entities.tsv:md5,f93b40a413fde8dd0a10712270c1a5f0",
+            "microbiomes_entities.tsv:md5,6cef150e7f5fc2f3320d9a93da00f5de",
             "microbiomes.tsv:md5,3d597aec25752f7ca83436b31bfaa128",
-            "proteins_peptides.tsv:md5,d3643f39837bc11a4984fa5260c2820f",
-            "peptides.tsv.gz:md5,afb2ba3ea67d4affb72d6e7f6451d45c",
+            "proteins_peptides.tsv:md5,c2a16b2d30c9cf5ea52207dd799b4603",
+            "peptides.tsv.gz:md5,dd0f94bea5079df8ef06895de255038b",
             "proteins.tsv.gz:md5,104b786dfa89e183a46e29f1f37f17de",
-            "predictions.tsv.gz:md5,29f3565a2c200753d0d890009ea68c8e",
+            "predictions.tsv.gz:md5,956fd0987dd9132a01559cc9c89ff4ca",
             "stats.txt:md5,d138e30d814db5203a789b7eddd04732"
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.04.3"
         },
-        "timestamp": "2024-07-18T08:43:42.547130099"
+        "timestamp": "2024-08-01T13:57:14.849262708"
     },
     "logs": {
         "content": [

diff --git a/tests/pipeline/test_mhcnuggets_2.nf.test.snap b/tests/pipeline/test_mhcnuggets_2.nf.test.snap
@@ -4,23 +4,23 @@
             "alleles.tsv:md5,ab0e4dbbb55b8154d37256018c19d67c",
             "conditions_alleles.tsv:md5,769c299e94c7df654a5a14da2771c95d",
             "conditions.tsv:md5,a6fe5daaf11a90b61c83c9934969c52c",
-            "entities_proteins.tsv:md5,20fa4e2263edf5875a55f668bfd54255",
-            "entities.tsv:md5,03eb30795257d5e6a0a52bdfc09481fd",
+            "entities_proteins.tsv:md5,2ba821a04755841dc6f116965f853f40",
+            "entities.tsv:md5,61f364c97c883f45663ae27d115b229f",
             "microbiomes_entities.no_weights.tsv:md5,bd449dafeb86c374552f2e22a9780b19",
             "microbiomes_entities.nucl.tsv:md5,3888070b634251c0ae3e9fd4857140d7",
-            "microbiomes_entities.tsv:md5,f93b40a413fde8dd0a10712270c1a5f0",
+            "microbiomes_entities.tsv:md5,6cef150e7f5fc2f3320d9a93da00f5de",
             "microbiomes.tsv:md5,3d597aec25752f7ca83436b31bfaa128",
-            "proteins_peptides.tsv:md5,d3643f39837bc11a4984fa5260c2820f",
-            "peptides.tsv.gz:md5,afb2ba3ea67d4affb72d6e7f6451d45c",
+            "proteins_peptides.tsv:md5,c2a16b2d30c9cf5ea52207dd799b4603",
+            "peptides.tsv.gz:md5,dd0f94bea5079df8ef06895de255038b",
             "proteins.tsv.gz:md5,104b786dfa89e183a46e29f1f37f17de",
-            "predictions.tsv.gz:md5,409c7af0f77acb5f57d26ec985d6753f",
+            "predictions.tsv.gz:md5,d88dfc746b74451b1cd00eb06ea834bb",
             "stats.txt:md5,d138e30d814db5203a789b7eddd04732"
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.04.3"
         },
-        "timestamp": "2024-07-18T08:45:26.411151617"
+        "timestamp": "2024-08-01T13:58:50.730628977"
     },
     "logs": {
         "content": [

diff --git a/tests/pipeline/test_mouse.nf.test.snap b/tests/pipeline/test_mouse.nf.test.snap
@@ -14,23 +14,23 @@
             "alleles.tsv:md5,314847ac5a69fe93ce75c6db0c2496d8",
             "conditions_alleles.tsv:md5,e865774e32935a69306461ff47428aa8",
             "conditions.tsv:md5,a6fe5daaf11a90b61c83c9934969c52c",
-            "entities_proteins.tsv:md5,490726a86418ba9eb6d248d439c690df",
-            "entities.tsv:md5,8c4aea9d11b4e00b539098743a70686c",
-            "microbiomes_entities.no_weights.tsv:md5,4d45837586c7c6dc4a19b41735215b01",
+            "entities_proteins.tsv:md5,72713ba58d4c87e54b015afdb2e4c856",
+            "entities.tsv:md5,02424da04f3ca8ddd587f63d2202acf6",
+            "microbiomes_entities.no_weights.tsv:md5,55eae24113e41d074d4b2e91912d7be6",
             "microbiomes_entities.nucl.tsv:md5,f5a3ff3cc1f8100f56238b9fab405e66",
-            "microbiomes_entities.tsv:md5,f8d9569231eeee796b23e250b37ea2ff",
+            "microbiomes_entities.tsv:md5,c8e318f1ff72f1469a1359085ff7bbef",
             "microbiomes.tsv:md5,2130005595bdc7ffc770d8304fd9a936",
-            "proteins_peptides.tsv:md5,033de254de014518dc3954700bf45979",
-            "peptides.tsv.gz:md5,1669dfbfd06c54ea2595934268698d0e",
-            "proteins.tsv.gz:md5,10935afd27899a048eed2c374ef52ccd",
-            "predictions.tsv.gz:md5,02f424dcbef3bbda87dfe15f82cacf01",
+            "proteins_peptides.tsv:md5,4179b229762eac3862de4d407db105a8",
+            "peptides.tsv.gz:md5,260d711f2ea11fb3327f3eff6b6a7516",
+            "proteins.tsv.gz:md5,3314974c69464fd88fb4a7de16811436",
+            "predictions.tsv.gz:md5,b9edf43eb41ac84bf129001fdc70b852",
             "stats.txt:md5,6e5ecca241fb1cd3fea7ea66c4b81e2a"
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.04.3"
         },
-        "timestamp": "2024-07-18T14:43:57.443165259"
+        "timestamp": "2024-08-02T11:37:25.76942764"
     },
     "logs": {
         "content": [

diff --git a/tests/pipeline/test_mouse_all_pep_lengths.nf.test.snap b/tests/pipeline/test_mouse_all_pep_lengths.nf.test.snap
@@ -4,23 +4,23 @@
             "alleles.tsv:md5,314847ac5a69fe93ce75c6db0c2496d8",
             "conditions_alleles.tsv:md5,9db7e0afc739b23c430877e336b0143f",
             "conditions.tsv:md5,a6fe5daaf11a90b61c83c9934969c52c",
-            "entities_proteins.tsv:md5,20fa4e2263edf5875a55f668bfd54255",
-            "entities.tsv:md5,03eb30795257d5e6a0a52bdfc09481fd",
+            "entities_proteins.tsv:md5,2ba821a04755841dc6f116965f853f40",
+            "entities.tsv:md5,61f364c97c883f45663ae27d115b229f",
             "microbiomes_entities.no_weights.tsv:md5,bd449dafeb86c374552f2e22a9780b19",
             "microbiomes_entities.nucl.tsv:md5,3888070b634251c0ae3e9fd4857140d7",
-            "microbiomes_entities.tsv:md5,f93b40a413fde8dd0a10712270c1a5f0",
+            "microbiomes_entities.tsv:md5,6cef150e7f5fc2f3320d9a93da00f5de",
             "microbiomes.tsv:md5,3d597aec25752f7ca83436b31bfaa128",
-            "proteins_peptides.tsv:md5,a36f320c292c459266d487c09527369c",
-            "peptides.tsv.gz:md5,4c05dc85b7de0a165f0c6745aaaeb60b",
+            "proteins_peptides.tsv:md5,101da74f4d060728f471d130490c1e83",
+            "peptides.tsv.gz:md5,d3120ff2e6c4599883e958605ea7089a",
             "proteins.tsv.gz:md5,104b786dfa89e183a46e29f1f37f17de",
-            "predictions.tsv.gz:md5,e9030a6180bc8492ba989e361b6f48d9",
+            "predictions.tsv.gz:md5,84ef89b536bae027616716ff387ac395",
             "stats.txt:md5,2675aa8f40b92d9df9c1537d77e8ade1"
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.04.3"
         },
-        "timestamp": "2024-07-18T07:19:25.909691429"
+        "timestamp": "2024-08-01T13:02:54.575826204"
     },
     "logs": {
         "content": [