Update snapshots for all tests

nf-core · Jul 10, 2024 · b4e75e4 · b4e75e4
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commit b4e75e4
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Showing 12 changed files with 195 additions and 63 deletions.
diff --git a/tests/pipeline/test.nf.test.snap b/tests/pipeline/test.nf.test.snap
@@ -13,15 +13,23 @@
             "proteins_peptides.tsv:md5,58547bc2efb9ae4f154710bb58d14c54",
             "peptides.tsv.gz:md5,66f6ceef1d5212d061b46c90703282d9",
             "proteins.tsv.gz:md5,07964ef2abee962131338b180399a4ee",
-            "stats.txt:md5,83204291158696ce5d19c4e976f38efe"
+            "stats.txt:md5,910aff94c66e62a31d28dda6e03b916f"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T13:21:39.072679876"
     },
     "logs": {
         "content": [
             "prediction_warnings.log:md5,d41d8cd98f00b204e9800998ecf8427e",
             "SUCCEEDED_unify_peptide_lengths.log:md5,c27fb56e478b975c57c910011935dd55"
         ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
         "timestamp": "2024-06-26T08:14:54+0000"
     }
-}
+}
diff --git a/tests/pipeline/test_all.nf.test.snap b/tests/pipeline/test_all.nf.test.snap
@@ -1,4 +1,14 @@
 {
+    "entrez_data": {
+        "content": [
+            "microbiomes_entities.entrez.tsv:md5,77463a684452d34795b6eda52cfad072"
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-06-26T08:14:54+0000"
+    },
     "db_tables": {
         "content": [
             "alleles.tsv:md5,77994270b1eab3e8363c90d8d09780fa",
@@ -7,20 +17,29 @@
             "entities.tsv:md5,8ae4f7ebc592712f45dea1ceaf5a18c0",
             "microbiomes_entities.nucl.tsv:md5,aa0d4cc3546508c8e5b81bc9b4b16e39",
             "microbiomes.tsv:md5,70871c8b3023f5a8412c05f4a69dda2f",
-            "stats.txt:md5,896155e0f043f30bd71c38c8ee7b466c"
-        ],
-        "timestamp": "2024-06-26T08:14:54+0000"
-    },
-    "entrez_data": {
-        "content": [
-            "microbiomes_entities.entrez.tsv:md5,77463a684452d34795b6eda52cfad072"
+            "peptides.tsv.gz:md5,36aba6d50b1aad95859a547b06d04fc5",
+            "proteins.tsv.gz:md5,b8c74032604f6ef5c3d73fdf8950aa6b",
+            "entities_proteins.tsv:md5,dfb070f991b705ad1d85dd48dcd5dd0c",
+            "microbiomes_entities.no_weights.tsv:md5,19a44189e6977fc64b78198ad609507a",
+            "microbiomes_entities.tsv:md5,78b8a81a3abca87ddca748efd14c64ec",
+            "proteins_peptides.tsv:md5,1c0a8c8ea8fbd85d0576714b5220b411",
+            "stats.txt:md5,b04463d0268b44814c2a1170a28b1a86"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T11:53:01.340056391"
     },
     "logs": {
         "content": [
-            "prediction_warnings.log:md5,d41d8cd98f00b204e9800998ecf8427e"
+            "prediction_warnings.log:md5,d41d8cd98f00b204e9800998ecf8427e",
+            "SUCCEEDED_unify_peptide_lengths.log:md5,c27fb56e478b975c57c910011935dd55"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T11:53:04.064515848"
     }
-}
+}
diff --git a/tests/pipeline/test_bins_only.nf.test.snap b/tests/pipeline/test_bins_only.nf.test.snap
@@ -13,15 +13,23 @@
             "proteins_peptides.tsv:md5,d93e37f0160156298abbb5106ac10aa5",
             "peptides.tsv.gz:md5,34497a1a57af3c3e48fceb762cf94f75",
             "proteins.tsv.gz:md5,e3c66cf6c5a54a52478a104f23d0d606",
-            "stats.txt:md5,62d598a845aff61f2be843daa250f485"
+            "stats.txt:md5,a5ef37919a11263ff387e859d1e8c33c"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T14:02:13.196005878"
     },
     "logs": {
         "content": [
             "prediction_warnings.log:md5,d41d8cd98f00b204e9800998ecf8427e",
             "SUCCEEDED_unify_peptide_lengths.log:md5,c27fb56e478b975c57c910011935dd55"
         ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
         "timestamp": "2024-06-26T08:14:54+0000"
     }
-}
+}
diff --git a/tests/pipeline/test_coassembly.nf.test.snap b/tests/pipeline/test_coassembly.nf.test.snap
@@ -13,15 +13,23 @@
             "proteins_peptides.tsv:md5,58547bc2efb9ae4f154710bb58d14c54",
             "peptides.tsv.gz:md5,66f6ceef1d5212d061b46c90703282d9",
             "proteins.tsv.gz:md5,2d25ff5eb066f3ddc8aa71a7acf5f3ce",
-            "stats.txt:md5,f2957aced6994532212f0d25b3efba98"
+            "stats.txt:md5,027c733d48c47409486c8c1b4425bb7a"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T14:36:20.870725787"
     },
     "logs": {
         "content": [
             "prediction_warnings.log:md5,d41d8cd98f00b204e9800998ecf8427e",
             "SUCCEEDED_unify_peptide_lengths.log:md5,c27fb56e478b975c57c910011935dd55"
         ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
         "timestamp": "2024-06-26T08:14:54+0000"
     }
-}
+}
diff --git a/tests/pipeline/test_mhcflurry.nf.test.snap b/tests/pipeline/test_mhcflurry.nf.test.snap
@@ -15,12 +15,20 @@
             "proteins.tsv.gz:md5,104b786dfa89e183a46e29f1f37f17de",
             "stats.txt:md5,d138e30d814db5203a789b7eddd04732"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T15:30:49.978724384"
     },
     "logs": {
         "content": [
             "prediction_warnings.log:md5,d2bb11e8da2c2003b18054bb1e6843ca"
         ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
         "timestamp": "2024-06-26T08:14:54+0000"
     }
-}
+}
diff --git a/tests/pipeline/test_mhcnuggets_1.nf.test.snap b/tests/pipeline/test_mhcnuggets_1.nf.test.snap
@@ -15,12 +15,20 @@
             "proteins.tsv.gz:md5,104b786dfa89e183a46e29f1f37f17de",
             "stats.txt:md5,d138e30d814db5203a789b7eddd04732"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T15:32:22.528505826"
     },
     "logs": {
         "content": [
             "prediction_warnings.log:md5,7c11afacf5a3060459cf58d3bd032230"
         ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
         "timestamp": "2024-06-26T08:14:54+0000"
     }
-}
+}
diff --git a/tests/pipeline/test_mhcnuggets_2.nf.test.snap b/tests/pipeline/test_mhcnuggets_2.nf.test.snap
@@ -15,12 +15,20 @@
             "proteins.tsv.gz:md5,104b786dfa89e183a46e29f1f37f17de",
             "stats.txt:md5,d138e30d814db5203a789b7eddd04732"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T15:34:00.046026014"
     },
     "logs": {
         "content": [
             "prediction_warnings.log:md5,d3ff6ac2a68d620e8f5023f4ab16a1b9"
         ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
         "timestamp": "2024-06-26T08:14:54+0000"
     }
-}
+}
diff --git a/tests/pipeline/test_model_information.nf.test.snap b/tests/pipeline/test_model_information.nf.test.snap
@@ -10,6 +10,10 @@
             "syfpeithi.v1.0.supported_alleles.txt:md5,e007149d8f41dafc1290791c5f726194",
             "syfpeithi.v1.0.supported_lengths.txt:md5,09d2bfbc74ac9aa5bb1a650f02b848df"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T15:13:19.924993689"
     }
-}
+}
diff --git a/tests/pipeline/test_mouse.nf.test.snap b/tests/pipeline/test_mouse.nf.test.snap
@@ -1,26 +1,45 @@
 {
+    "entrez_data": {
+        "content": [
+            "microbiomes_entities.entrez.tsv:md5,77463a684452d34795b6eda52cfad072"
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-06-26T08:14:54+0000"
+    },
     "db_tables": {
         "content": [
             "alleles.tsv:md5,314847ac5a69fe93ce75c6db0c2496d8",
             "conditions_alleles.tsv:md5,e865774e32935a69306461ff47428aa8",
             "conditions.tsv:md5,a6fe5daaf11a90b61c83c9934969c52c",
+            "entities_proteins.tsv:md5,4d1e6bd45c920b04f74c0f0c1d53efc8",
             "entities.tsv:md5,1b26a72cb5f731ba04ed53b6e69237b7",
+            "microbiomes_entities.no_weights.tsv:md5,dc9ec36f31bc43f5aeaeb542a2af3e6b",
             "microbiomes_entities.nucl.tsv:md5,f5a3ff3cc1f8100f56238b9fab405e66",
+            "microbiomes_entities.tsv:md5,86346e23fe421e1d9e72bfc955e10db3",
             "microbiomes.tsv:md5,2130005595bdc7ffc770d8304fd9a936",
-            "stats.txt:md5,6e5ecca241fb1cd3fea7ea66c4b81e2a"
-        ],
-        "timestamp": "2024-06-26T08:14:54+0000"
-    },
-    "entrez_data": {
-        "content": [
-            "microbiomes_entities.entrez.tsv:md5,77463a684452d34795b6eda52cfad072"
+            "proteins_peptides.tsv:md5,a17cd18e1fe9ad73d8e18d241f77c0c2",
+            "peptides.tsv.gz:md5,260d711f2ea11fb3327f3eff6b6a7516",
+            "proteins.tsv.gz:md5,328b977d64261bb5c45b34ce10d261a7",
+            "stats.txt:md5,8ba4d24d65db50958f31f97fecbbe24e"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T11:56:01.02980843"
     },
     "logs": {
         "content": [
-            "prediction_warnings.log:md5,d41d8cd98f00b204e9800998ecf8427e"
+            "prediction_warnings.log:md5,d41d8cd98f00b204e9800998ecf8427e",
+            "WARNING_unify_peptide_lengths.log:md5,c554eace446f21ad0c7990c92554edb0"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T11:56:01.153832945"
     }
-}
+}
diff --git a/tests/pipeline/test_mouse_all_pep_lengths.nf.test.snap b/tests/pipeline/test_mouse_all_pep_lengths.nf.test.snap
@@ -15,12 +15,20 @@
             "proteins.tsv.gz:md5,104b786dfa89e183a46e29f1f37f17de",
             "stats.txt:md5,2675aa8f40b92d9df9c1537d77e8ade1"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T15:14:33.12333411"
     },
     "logs": {
         "content": [
             "prediction_warnings.log:md5,9d5716a14848b2e7ec5766cb1c1c2bf5"
         ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
         "timestamp": "2024-06-26T08:14:54+0000"
     }
-}
+}
diff --git a/tests/pipeline/test_taxa_only.nf.test.snap b/tests/pipeline/test_taxa_only.nf.test.snap
@@ -1,26 +1,45 @@
 {
+    "entrez_data": {
+        "content": [
+            "microbiomes_entities.entrez.tsv:md5,d74ec125c02485cae58a08a334bf4844"
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-06-26T08:14:54+0000"
+    },
     "db_tables": {
         "content": [
             "alleles.tsv:md5,77994270b1eab3e8363c90d8d09780fa",
             "conditions_alleles.tsv:md5,9db7e0afc739b23c430877e336b0143f",
             "conditions.tsv:md5,a6fe5daaf11a90b61c83c9934969c52c",
+            "entities_proteins.tsv:md5,04ffe2b3aab37d78a4330bbea6f95821",
             "entities.tsv:md5,c766a12bbb1d4ef4707be7077f774191",
+            "microbiomes_entities.no_weights.tsv:md5,4ca0afaa5fb1a3f4960c775ad24ae363",
             "microbiomes_entities.nucl.tsv:md5,84b6b907695caaddc959682504749832",
+            "microbiomes_entities.tsv:md5,986a063182a36d0515e1d1b31f0e49fa",
             "microbiomes.tsv:md5,05bafa72c953e6cb0bd72c296d6fe707",
+            "proteins_peptides.tsv:md5,22f41ed9483a67b2f7644fb5f7b61eda",
+            "peptides.tsv.gz:md5,0e3c1e87feb2aac34de1ba3b246f27ca",
+            "proteins.tsv.gz:md5,6f8d47a842ce55855f0075fd48455397",
             "stats.txt:md5,c10c27a1ba080ff59dcb5b62467129b2"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
-    },
-    "entrez_data": {
-        "content": [
-            "microbiomes_entities.entrez.tsv:md5,d74ec125c02485cae58a08a334bf4844"
-        ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T12:01:34.241428694"
     },
     "logs": {
         "content": [
-            "prediction_warnings.log:md5,d41d8cd98f00b204e9800998ecf8427e"
+            "prediction_warnings.log:md5,d41d8cd98f00b204e9800998ecf8427e",
+            "SUCCEEDED_unify_peptide_lengths.log:md5,c27fb56e478b975c57c910011935dd55"
         ],
-        "timestamp": "2024-06-26T08:14:54+0000"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-10T11:07:57.477692224"
     }
-}
+}