Merge pull request #98 from tillenglert/bugfix/CI_test_all

Forgot to add test_all to nextflow.config
nf-core · Oct 17, 2023 · 8bea247 · 8bea247
2 parents 2e8e11b + 07b5974
commit 8bea247
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -40,7 +40,7 @@ Pipeline has been re-implemented in [Nextflow DSL2](https://www.nextflow.io/docs
 - [#91](https://github.com/nf-core/metapep/pull/91) - Added new parameter to allow all input peptide lengths to be predicted, and also necessary checks to circumvent errors during predictions
 - [#94](https://github.com/nf-core/metapep/pull/94) - Updated workflow overview figure
 - [#96](https://github.com/nf-core/metapep/pull/96) - Rework of chunk sizes and adjusting and creating the corresponding parameters (`--prediction_chunk_size`, `--pred_chunk_size_scaling`, `--downstream_chunk_size`, `--pred_buffer_files`) to optimise the number and size of jobs for large datasets
-- [#93](https://github.com/nf-core/metapep/pull/93) - Added new tests and replaced tests to have a broader test landscape
+- [#93](https://github.com/nf-core/metapep/pull/93), [#98](https://github.com/nf-core/metapep/pull/98) - Added new tests and replaced tests to have a broader test landscape
 
 ### `Fixed`
 

diff --git a/nextflow.config b/nextflow.config
@@ -189,18 +189,17 @@ profiles {
     }
     test                        { includeConfig 'conf/test.config'                          }
     test_mouse                  { includeConfig 'conf/test_mouse.config'                    }
-    test_tiny                   { includeConfig 'conf/test_tiny.config'                     }
     test_assembly_only          { includeConfig 'conf/test_assembly_only.config'            }
     test_taxa_only              { includeConfig 'conf/test_taxa_only.config'                }
     test_bins_only              { includeConfig 'conf/test_bins_only.config'                }
-    test_bins                   { includeConfig 'conf/test_bins.config'                     }
     test_coassembly             { includeConfig 'conf/test_coassembly.config'               }
     test_full                   { includeConfig 'conf/test_full.config'                     }
     test_model_information      { includeConfig 'conf/test_model_information.config'        }
     test_mouse_all_pep_lengths  { includeConfig 'conf/test_mouse_all_pep_lengths.config'    }
     test_mhcflurry              { includeConfig 'conf/test_mhcflurry.config'                }
     test_mhcnuggets_1           { includeConfig 'conf/test_mhcnuggets_1.config'             }
     test_mhcnuggets_2           { includeConfig 'conf/test_mhcnuggets_2.config'             }
+    test_all                    { includeConfig 'conf/test_all.config'                      }
 }
 
 // Set default registry for Apptainer, Docker, Podman and Singularity independent of -profile