Merge pull request #746 from sguizard/roslin.config_update_rl9_false

roslin.config - Exclude Rocky Linux nodes
nf-core · Sep 9, 2024 · f8c22df · f8c22df
2 parents 8bbbfb9 + 8a3c010
commit f8c22df
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Showing 2 changed files with 11 additions and 4 deletions.
diff --git a/conf/roslin.config b/conf/roslin.config
@@ -24,9 +24,9 @@ process {
         // Check if an environment variable NFX_SGE_PROJECT exists, if yes, use the stored value for -P option
         // Otherwise set the project to uoe_baseline
         if (System.getenv('NFX_SGE_PROJECT')) {
-            clusterOptions = {"-l h=!node1d01 -l h_vmem=10G -pe sharedmem 5 -P $NFX_SGE_PROJECT"}
+            clusterOptions = {"-l rl9=false -l h=!node1d01 -l h_vmem=10G -pe sharedmem 5 -P $NFX_SGE_PROJECT"}
         } else {
-            clusterOptions = {"-l h=!node1d01 -l h_vmem=10G -pe sharedmem 5 -P uoe_baseline"}
+            clusterOptions = {"-l rl9=false -l h=!node1d01 -l h_vmem=10G -pe sharedmem 5 -P uoe_baseline"}
         }
     }
 
@@ -41,9 +41,9 @@ process {
         // Check if an environment variable NFX_SGE_PROJECT exists, if yes, use the stored value for -P option
         // Otherwise set the project to uoe_baseline
         if (System.getenv('NFX_SGE_PROJECT')) {
-            clusterOptions = {"-l h=!node1d01 -l h_vmem=${(task.memory + 8.GB).bytes/task.cpus} -P $NFX_SGE_PROJECT"}
+            clusterOptions = {"-l rl9=false -l h=!node1d01 -l h_vmem=${(task.memory + 8.GB).bytes/task.cpus} -P $NFX_SGE_PROJECT"}
         } else {
-            clusterOptions = {"-l h=!node1d01 -l h_vmem=${(task.memory + 8.GB).bytes/task.cpus} -P uoe_baseline"}
+            clusterOptions = {"-l rl9=false -l h=!node1d01 -l h_vmem=${(task.memory + 8.GB).bytes/task.cpus} -P uoe_baseline"}
         }
     }
 

diff --git a/docs/roslin.md b/docs/roslin.md
@@ -58,6 +58,13 @@ If you wish, you place this variable declaration in your `.bashrc` file located
 
 **NB:** This will work only with the roslin profile.
 
+## Nodes exclusion
+
+The roslin profile excludes some specific nodes.
+The superdome node is reserved for special applications, and the access must be requested.
+Eddie's nodes are being migrated to Rocky Linux 9 and some of them are already online. These are not fully set up yet and jobs have troubles to run on them.
+Until those nodes are stable, we exclude them.
+
 ## Running Nextflow
 
 ### On a login node