Merge branch 'master' into uw_hyak_pedslabs

nf-core · Jul 5, 2023 · 8f13a6c · 8f13a6c
2 parents a9bebc5 + 2202b61
commit 8f13a6c
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Showing 2 changed files with 6 additions and 14 deletions.
diff --git a/conf/pipeline/rnaseq/eddie.config b/conf/pipeline/rnaseq/eddie.config
@@ -1,14 +1,6 @@
 process {
 
-withName : "PICARD_MARKDUPLICATES" {
-    clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
-}
-
-withName : "QUALIMAP_RNASEQ" {
-    clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
-}
-
-withName : "FASTQC" {
+withName : "PICARD_MARKDUPLICATES|QUALIMAP_RNASEQ|FASTQC|BBMAP_BBSPLIT" {
     clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
 }
 

diff --git a/conf/vsc_ugent.config b/conf/vsc_ugent.config
@@ -47,7 +47,7 @@ profiles {
             config_profile_url = 'https://www.ugent.be/hpc/en'
             max_memory = 177.GB
             max_cpus = 36
-            max_time = 72.h
+            max_time = "3day"
         }
 
         process {
@@ -63,7 +63,7 @@ profiles {
             config_profile_url = 'https://www.ugent.be/hpc/en'
             max_memory = 116.GB
             max_cpus = 20
-            max_time = 72.h
+            max_time = "3day"
         }
 
         process {
@@ -79,7 +79,7 @@ profiles {
             config_profile_url = 'https://www.ugent.be/hpc/en'
             max_memory = 88.GB
             max_cpus = 36
-            max_time = 72.h
+            max_time = "3day"
         }
 
         process {
@@ -95,7 +95,7 @@ profiles {
             config_profile_url = 'https://www.ugent.be/hpc/en'
             max_memory = 738.GB
             max_cpus = 36
-            max_time = 72.h
+            max_time = "3day"
         }
 
         process {
@@ -111,7 +111,7 @@ profiles {
             config_profile_url = 'https://www.ugent.be/hpc/en'
             max_memory = 250.GB
             max_cpus = 96
-            max_time = 72.h
+            max_time = "3day"
         }
 
         process {