relocate clusterOptions and scratch

move clusterOptions and scratch out of executor, and move them into process.
nf-core · Sep 23, 2024 · 67ed00c · 67ed00c
1 parent c77c117
commit 67ed00c
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/conf/biowulf.config b/conf/biowulf.config
@@ -29,13 +29,13 @@ executor {
     queueStatInterval = '5 min'
     submitRateLimit = '6/1min'
     retry.maxAttempts = 1
-    clusterOptions = ' --gres=lscratch:200 '
-    scratch = '/lscratch/$SLURM_JOB_ID'
-         }
-
+}
+
 process {
     executor = 'slurm'
     maxRetries = 1
+    clusterOptions = ' --gres=lscratch:200 '
+    scratch = '/lscratch/$SLURM_JOB_ID'
     stageInMode = 'symlink'
     stageOutMode = 'rsync'
     resourceLimits = [ cpus: 128, memory: 499.GB, time: 240.h ]