Merge pull request #753 from wassimsalam01/master

Update fub_curta.config and fub_curta.md

conf/fub_curta.config

@@ -1,29 +1,29 @@
 // Config profile metadata
 params {
-    config_profile_contact = 'Wassim Salam (@wassimsalam01)'
+    config_profile_contact        = 'Wassim Salam (@wassimsalam01)'
     config_profile_contact_github = '@wassimsalam01'
-    config_profile_contact_email = 'TODO'
-    config_profile_name = 'FUB Curta'
-    config_profile_description = 'Freie Universität Berlin HPC (Curta) profile'
-    config_profile_url = 'https://www.fu-berlin.de/en/sites/high-performance-computing/index.html'
+    config_profile_contact_email  = '[email protected]'
+    config_profile_name           = 'FUB Curta'
+    config_profile_description    = 'Freie Universität Berlin HPC (Curta) profile'
+    config_profile_url            = 'https://www.fu-berlin.de/en/sites/high-performance-computing/index.html'
 
-    max_cpus = 32
+    max_cpus   = 32
     max_memory = 772.GB
-    max_time = 14.d
+    max_time   = 14.d
 }
 
 def membership = ['/bin/bash', '-c', 'groups'].execute().text.trim()
 
 // Slurm configuration parameters
 process {
-    executor = 'slurm'
-    maxRetries = 3
+    executor       = 'slurm'
+    maxRetries     = 3
     clusterOptions = { (membership.startsWith("b") ? '--partition=begendiv,main ' : '--partition=main ') << ( task.time <= 3.h ? '--qos=hiprio' : ( task.time <= 3.d ? '--qos=prio' : '--qos=standard' ) ) }
 }
 
 // Singularity parameters
 singularity {
-    enabled = true
+    enabled    = true
     autoMounts = true
 }
 

docs/fub_curta.md

@@ -26,7 +26,7 @@ In addition, job submissions are assigned the appropriate quality of service (QO
 
 Institute-specific pipeline profiles exists for:
 
-- [methylseq](pipeline/methylseq/fub_curta.md)
+- [methylseq](https://github.com/nf-core/configs/blob/master/docs/pipeline/methylseq/fub_curta.md)
 
 ## debug profile