Switch to augur curate titlecase

nextstrain · Sep 14, 2023 · eb7af54 · eb7af54
1 parent 19ceb13
commit eb7af54
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Showing 2 changed files with 1 addition and 85 deletions.
diff --git a/ingest/bin/transform-string-fields b/ingest/bin/transform-string-fields
diff --git a/ingest/workflow/snakemake_rules/transform.smk b/ingest/workflow/snakemake_rules/transform.smk
@@ -75,7 +75,7 @@ rule transform:
                 --date-fields {params.date_fields} \
                 --expected-date-formats {params.expected_date_formats} \
             | ./vendored/transform-genbank-location \
-            | ./bin/transform-string-fields \
+            | augur curate titlecase \
                 --titlecase-fields {params.titlecase_fields} \
                 --articles {params.articles} \
                 --abbreviations {params.abbreviations} \