Merge pull request #30: Add CI and example data

nextstrain · Aug 5, 2023 · 3d086ca · 3d086ca
2 parents ba171f4 + 538442d
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diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -0,0 +1,9 @@
+name: CI
+
+on:
+  - push
+  - pull_request
+
+jobs:
+  pathogen-ci:
+    uses: nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@master
diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,25 @@
+# Files created by the pipeline, which we want to keep out of git
+# (or at least out of _this_ git repo).
+data/
+results/
+auspice/
+build/
+
+# Snakemake
+.snakemake/
+logs/
+
+# Python
+*.pyc
+.tox/
+.cache/
+
+# OS generated files
+.DS_Store
+.DS_Store?
+._*
+.Spotlight-V100
+.Trashes
+Icon?
+ehthumbs.db
+Thumbs.db
diff --git a/README.md b/README.md
@@ -35,3 +35,13 @@ Follow the standard [installation instructions](https://docs.nextstrain.org/en/l
 ## Data Use
 
 We gratefully acknowledge the authors, originating and submitting laboratories of the genetic sequences and metadata for sharing their work. Please note that although data generators have generously shared data in an open fashion, that does not mean there should be free license to publish on this data. Data generators should be cited where possible and collaborations should be sought in some circumstances.
+
+### Update example data
+
+[Example data](./example_data/) is used by [CI](https://github.com/nextstrain/rsv/actions/workflows/ci.yaml). It can also be used as a small subset of real-world data.
+
+Example data should be updated every time metadata schema is changed. To update, run:
+
+```sh
+nextstrain build --docker . update_example_data -F
+```
diff --git a/Snakefile b/Snakefile
@@ -12,6 +12,8 @@ rule all:
                subtype = config.get("subtypes",['a']),
                build = config.get("buildstorun", ['genome']))
 
+include: "workflow/snakemake_rules/chores.smk"
+
 include: "workflow/snakemake_rules/core.smk"
 
 include: "workflow/snakemake_rules/export.smk"

diff --git a/example_data/a/metadata.tsv b/example_data/a/metadata.tsv
@@ -0,0 +1,60 @@
+accession	genbank_accession_rev	strain	date	region	country	division	location	host	date_submitted	sra_accession	abbr_authors	reverse	authors	institution	F_coverage	G_coverage	genome_coverage
+KU316157	KU316157.1	KU316157	1979-XX-XX	North America	USA	Rochester	Ny	Homo sapiens	2016-01-30		Das et al		Das,S.R., Halpin,R.A., Puri,V., Akopov,A., Fedorova,N., Stockwell,T., Amedeo,P., Bishop,B., Katzel,D., Schobel,S., Shrivastava,S., Hall,C.B., Tesini,B.L., Schnabel,K.C., Walsh,E.E., Caserta,M.		1.0	1.0	0.985
+KU316138	KU316138.1	KU316138	1987-XX-XX	North America	USA	Rochester	Ny	Homo sapiens	2016-01-30		Das et al		Das,S.R., Halpin,R.A., Puri,V., Akopov,A., Fedorova,N., Stockwell,T., Amedeo,P., Bishop,B., Katzel,D., Schobel,S., Shrivastava,S., Hall,C.B., Tesini,B.L., Schnabel,K.C., Walsh,E.E., Caserta,M.		1.0	1.0	0.997
+JX198137	JX198137.1	JX198137	1987-12-XX	North America	USA	Texas	Tx	Homo sapiens	2014-03-08		Tapia et al		Tapia,L.I., Shaw,C.A., Aideyan,L.O., Jewell,A.M., Dawson,B.C., Haq,T.R., Piedra,P.A.		1.0	1.0	0.228
+KU316092	KU316092.1	KU316092	1991-XX-XX	North America	USA	Rochester	Ny	Homo sapiens	2016-01-30		Das et al		Das,S.R., Halpin,R.A., Puri,V., Akopov,A., Fedorova,N., Stockwell,T., Amedeo,P., Bishop,B., Katzel,D., Schobel,S., Shrivastava,S., Hall,C.B., Tesini,B.L., Schnabel,K.C., Walsh,E.E., Caserta,M.		1.0	1.0	0.996
+KP258703	KP258703.1	KP258703	1997-XX-XX	North America	USA	New York		Homo sapiens	2014-12-21		Das et al		Das,S.R., Halpin,R.A., Puri,V., Akopov,A., Fedorova,N., Stockwell,T., Amedeo,P., Bishop,B., Katzel,D., Schobel,S., Shrivastava,S., Wentworth,D.E., Caserta,M.		1.0	1.0	0.997
+JX256943	JX256943.1	MY-19443-98	1998-12-XX	Asia	Malaysia			Homo sapiens	2013-01-24		Khor et al		Khor,C.S., Sam,I.C., Hooi,P.S., Chan,Y.F.		0.0	0.27	0.017
+DQ171792	DQ171792.1	NZA_98_01	1998-XX-XX	Oceania	New Zealand				2006-07-19		Matheson et al		Matheson,J.W., Rich,F.J., Cohet,C., Grimwood,K., Huang,Q.S., Penny,D., Hendy,M.D., Kirman,J.R.		0.059	0.539	0.046
+LC337846	LC337846.1	LC337846	1999-12-27	Asia	Japan	Yokohama		Homo sapiens	2017-11-29		Saikusa et al		Saikusa,M., Kawakami,C., Usuku,S., Sasao,T., Okubo,I.		1.0	0.0	0.114
+LC337835	LC337835.1	LC337835	1999-11-09	Asia	Japan	Yokohama		Homo sapiens	2017-11-29		Saikusa et al		Saikusa,M., Kawakami,C., Usuku,S., Sasao,T., Okubo,I.		1.0	0.0	0.114
+JX477456	JX477456.1	A89-49-00	2000-XX-XX	Asia	Taiwan			Homo sapiens	2012-10-30		Chi et al		Chi,H., Liu,H.F., Weng,L.C., Wang,N.Y., Chiu,N.C., Lai,M.J., Lin,Y.C., Chiu,Y.Y., Hsieh,W.S., Huang,L.M., Chiang,C.L., Huang,G.J., Cheng,Y.Y.		0.558	0.0	0.063
+JF500088	JF500088.1	RSVARG656001C6	2001-XX-XX	South America	Argentina			Homo sapiens	2011-11-09		Viegas et al		Viegas,M., Mistchenko,A.S.		0.0	0.613	0.039
+MF372397	MF372397.1	Caldas/2001/2978	2001-XX-XX	South America	Colombia			Homo sapiens	2017-10-25		Avila et al		Avila,V., Calvo,E.P., Barbosa,J., Velandia-Romero,M.L., Castellanos,J.E.		0.089	0.184	0.027
+MF372401	MF372401.1	Bogota/2001/2960	2001-XX-XX	South America	Colombia			Homo sapiens	2017-10-25		Avila et al		Avila,V., Calvo,E.P., Barbosa,J., Velandia-Romero,M.L., Castellanos,J.E.		0.066	0.195	0.025
+FJ391391	FJ391391.1	GER/2733/00-01	2001-04-05	Europe	Germany			Homo sapiens	2009-06-10		Reiche et al		Reiche,J., Schweiger,B., Zadow,I., Lehmann,H., Tietze,S., Hafemann,S., Kluge,P.		0.0	0.27	0.018
+JX513310	JX513310.1	BR_CE_187_2002	2002-XX-XX	South America	Brazil			Homo sapiens	2014-04-20		Moura et al		Moura,F.E.A., Thomazelli,L.M., Candido,E.D.O., Florencio,C.M.G.D., Pereira,S.A.R., Oliveira,F.M.S., Alves,A.A., Ocadaque,C.J., Durigon,E.L.		0.083	0.712	0.06
+JX477463	JX477463.1	A91-334-02	2002-XX-XX	Asia	Taiwan			Homo sapiens	2012-10-30		Chi et al		Chi,H., Liu,H.F., Weng,L.C., Wang,N.Y., Chiu,N.C., Lai,M.J., Lin,Y.C., Chiu,Y.Y., Hsieh,W.S., Huang,L.M., Chiang,C.L., Huang,G.J., Cheng,Y.Y.		0.548	0.0	0.062
+AB603462	AB603462.1	AB603462	2003-09-01	Asia	Japan	Niigata		Homo sapiens	2010-12-11		Yamaguchi et al		Yamaguchi,M., Sano,Y., Dapat,I.C., Saito,R., Suzuki,Y., Kumaki,A., Shobugawa,Y., Dapat,C., Uchiyama,M., Suzuki,H.		0.0	0.264	0.018
+KT765835	KT765835.1	KEN/Kilifi/562_26/02/2004	2004-02-26	Africa	Kenya			Homo sapiens	2016-02-27		Otieno et al		Otieno,J.R., Agoti,C.N., Gitahi,C.W., Bett,A., Ngama,M., Medley,G.F., Cane,P.A., Nokes,D.J., Nokes,J.D.		0.0	0.637	0.041
+MF496442	MF496442.1	R94-1085	2005-XX-XX	Asia	Taiwan			Homo sapiens	2017-08-30		Chi et al		Chi,H., Hsiao,K.-L., Weng,L.-C., Chiu,N.-C., Huang,L.-M., Chiu,Y.-Y., Liu,C.-P., Liu,H.-F.		0.0	0.616	0.039
+JF776694	JF776694.1	C0607-1011-A	2006-12-18	North America	Canada			Homo sapiens	2011-12-27		Papenburg et al		Papenburg,J., Carbonneau,J., Hamelin,M.E., Isabel,S., Bouhy,X., Ohoumanne,N., Dery,P., Paes,B.A., Corbeil,J., Bergeron,M.G., De Serres,G., Boivin,G., Hamelin,M.-E.		0.887	0.0	0.101
+AB603444	AB603444.1	AB603444	2006-12-05	Asia	Japan	Niigata		Homo sapiens	2010-12-11		Yamaguchi et al		Yamaguchi,M., Sano,Y., Dapat,I.C., Saito,R., Suzuki,Y., Kumaki,A., Shobugawa,Y., Dapat,C., Uchiyama,M., Suzuki,H.		0.0	0.27	0.018
+OM962799	OM962799.1	MetroManila.PHL/2006/086	2006-XX-XX	Asia	Philippines			Homo sapiens	2022-06-29		Calaor-Morin et al		Calaor-Morin,J., Arguelles,V.L., Foronda,J.L., Tan,A., Lagamayo,E., Dapat,C., Lupisan,S., Morin,J.C., Foronda,J.L.M.		0.0	0.267	0.017
+FR681615	FR681615.1	FR681615	2007-02-XX	Europe	France	Normandie			2010-09-07		Bellot et al		Bellot,A., Leroux,M., Vabret,A., Freymuth,F., Dina,J.		0.0	0.485	0.019
+KP765590	KP765590.1	KP765590	2007-11-XX	Asia	India			Homo sapiens	2018-02-28		Damle et al		Damle,R.G., Chadha,M.S.		0.0	0.27	0.018
+KF826840	KF826840.1	KF826840	2007-02-16	North America	Mexico			Homo sapiens	2013-11-25		Lorenzi et al		Lorenzi,H., Town,C., Halpin,R., Bera,J., Ransier,A., Fedorova,N., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Rebuffo-Scheer,C., Fan,J., He,J., Kehl,S.C., Lederboer,N., Jurgens,L.A., Bose,M.E., Beck,E.T., Kumar,S., Noyola,D.E., Wentworth,D.E., Henrickson,K.J.		1.0	1.0	0.993
+KF300971	KF300971.1	PAN1A/2008	2008-10-14	North America	Panama			Homo sapiens	2014-05-31		Abrego et al		Abrego,L., Delfraro,A., Franco,D., Castillo,C., Cano,M., Castillo,M., Castillo,J., Pascale,J., Arbiza,J.		0.0	0.847	0.053
+KJ627336	KJ627336.1	KJ627336	2008-02-29	South America	Peru	Piura		Homo sapiens	2014-04-07		Wentworth et al		Wentworth,D.E., Halpin,R.A., Bera,J., Lin,X., Fedorova,N., Tsitrin,T., McLellan,M., Stockwell,T., Amedeo,P., Bishop,B., Gupta,N., Hoover,J., Katzel,D., Schobel,S., Shrivastava,S., Garcia,J., Laguna-Torres,V.A., Leguia,M., Benavides,J.G., Halsey,E.		1.0	1.0	0.996
+HQ731741	HQ731741.1	HQ731741	2008-XX-XX	Europe	United Kingdom	Scotland		Homo sapiens	2011-02-14		Gaunt et al		Gaunt,E.R., Jansen,R.R., Poovorawan,Y., Templeton,K.E., Toms,G.L., Simmonds,P.		0.051	0.734	0.058
+MG062683	MG062683.1	MEX/61/2009	2009-12-27	North America	Mexico			Homo sapiens	2018-02-07		Comas-Garcia et al		Comas-Garcia,A., Noyola,D.E., Cadena-Mota,S., Rico-Hernandez,M., Bernal-Silva,S.		0.076	1.0	0.088
+OK078649	OK078649.1	OK078649	2009-10-XX	Asia	Pakistan			Homo sapiens	2022-11-11		Aziz et al		Aziz,F., Rafaqat,W., Farooqui,N., Ali,S.A., Abidi,S.H.		0.0	0.32	0.02
+OK078637	OK078637.1	OK078637	2009-10-XX	Asia	Pakistan			Homo sapiens	2022-11-11		Aziz et al		Aziz,F., Rafaqat,W., Farooqui,N., Ali,S.A., Abidi,S.H.		0.0	0.32	0.02
+JN257693	JN257693.1	JN257693	2010-12-29	North America	Canada	Ontario		Homo sapiens	2011-10-25		Eshaghi et al		Eshaghi,A., Duvvuri,V.R., Lai,R., Nadarajah,J.T., Li,A., Patel,S.N., Low,D.E., Gubbay,J.B.		0.0	1.0	0.059
+AB683216	AB683216.1	AB683216	2010-02-10	Asia	Japan	Gunma			2012-06-29		Yoshida et al		Yoshida,A., Kiyota,N., Kobayashi,M., Nishimura,K., Tsutsui,R., Tsukagoshi,H., Hirano,E., Yamamoto,N., Ryo,A., Saitoh,M., Harada,S., Inoue,O., Kozawa,K., Tanaka,R., Noda,M., Okabe,N., Tashiro,M., Mizuta,K., Kimura,H.		0.0	0.404	0.026
+JF920054	JF920054.1	JF920054	2010-02-16	North America	USA	Milwaukee	Wi	Homo sapiens	2011-10-23		Rebuffo-Scheer et al		Rebuffo-Scheer,C., Bose,M.E., He,J., Khaja,S., Ulatowski,M., Beck,E.T., Fan,J., Kumar,S., Nelson,M.I., Henrickson,K.J.		1.0	1.0	0.994
+KF171942	KF171942.1	Alborz/A/11/6475	2011-04-02	Asia	Iran			Homo sapiens	2013-10-26		Faghihloo et al		Faghihloo,E., Yavarian,J., Jandaghi,N.Z., Shadab,A., Azad,T.M., Mokhtari Azad,T.		0.0	0.264	0.017
+MN122441	MN122441.1	RSVA/Portugal/su494/2010-11	2011-XX-XX	Europe	Portugal			Homo sapiens	2019-08-24		Saez-Lopez et al		Saez-Lopez,E., Cristovao,P., Costa,I., Pechirra,P., Conde,P., Guiomar,R.		0.0	0.27	0.017
+MW306488	MW306488.1	BGD/359990/RSV_A/2012	2012-XX-XX	Asia	Bangladesh			Homo sapiens	2021-11-01		Rahman et al		Rahman,M.Z., Hossain,M.E., Sumiya,M.K., Islam,M.M., Begum,M.N., Hoque,A.F., Uddin,K.M.M., Hassan,M.Z., Rahman,M., Goswami,D.R., Brooks,W.A.		0.0	0.181	0.016
+MK034803	MK034803.1	U426	2012-05-02	Asia	Malaysia			Homo sapiens	2020-12-31		Ng et al		Ng,K.T., Oong,X.Y., Hanafi,N.S., Kamarulzaman,A., Sam,I.-C., Chan,Y.F., Tee,K.K.		0.0	0.267	0.017
+MH266573	MH266573.1	RSVA/Nepal/Oth20/1_2012	2012-01-XX	Asia	Nepal			Homo sapiens	2019-02-05		Scott et al		Scott,E.M., Magaret,A., Kuypers,J., Stewart,L., Shrestha,L., Tielsch,J.M., Steinhoff,M., Katz,J., Khatry,S.K., LeClerq,S.C., Englund,J.A., Chu,H.Y.		0.0	0.311	0.02
+KF301010	KF301010.1	PAN40A/2012	2012-03-28	North America	Panama			Homo sapiens	2014-05-31		Abrego et al		Abrego,L., Delfraro,A., Franco,D., Castillo,C., Cano,M., Castillo,M., Castillo,J., Pascale,J., Arbiza,J.		0.0	0.906	0.057
+KM508822	KM508822.1	Py231A	2012-07-05	South America	Paraguay			Homo sapiens	2014-12-10		Espinola et al		Espinola,E.E., Russomando,G., Basualdo,W., Paranhos-Baccala,G.		0.0	1.0	0.06
+KJ627347	KJ627347.1	KJ627347	2012-05-15	South America	Peru	Lima		Homo sapiens	2014-04-07		Wentworth et al		Wentworth,D.E., Halpin,R.A., Bera,J., Lin,X., Fedorova,N., Tsitrin,T., McLellan,M., Stockwell,T., Amedeo,P., Bishop,B., Gupta,N., Hoover,J., Katzel,D., Schobel,S., Shrivastava,S., Garcia,J., Laguna-Torres,V.A., Leguia,M., Benavides,J.G., Halsey,E.		0.958	1.0	0.906
+KX987653	KX987653.1	15-013Gua	2013-XX-XX	North America	Guatemala			Homo sapiens	2017-11-04		Lupo et al		Lupo,P., Jara,J., Alvis,J.P., Pennington,P., Castillo,L., Moreno,B., Albrego,L.		0.0	0.34	0.022
+OK078721	OK078721.1	OK078721	2013-02-XX	Asia	Pakistan			Homo sapiens	2022-11-11		Aziz et al		Aziz,F., Rafaqat,W., Farooqui,N., Ali,S.A., Abidi,S.H.		0.0	0.32	0.02
+KU726081	KU726081.1	KU726081	2014-XX-XX	Asia	Saudi Arabia			Homo sapiens	2016-11-22		Ahmed et al		Ahmed,A., Haider,S.H., Parveen,S., Arshad,M., Alsenaidy,H.A., Baaboud,A.O., Mobaireek,K.F., AlSaadi,M.M., Alsenaidy,A.M., Sullender,W., Haider,M.S.H., AlSenaidy,A.M., Sullender,W.M.		0.0	0.224	0.014
+MF496528	MF496528.1	M103-17	2014-XX-XX	Asia	Taiwan			Homo sapiens	2017-08-30		Chi et al		Chi,H., Hsiao,K.-L., Weng,L.-C., Chiu,N.-C., Huang,L.-M., Chiu,Y.-Y., Liu,C.-P., Liu,H.-F.		0.0	0.616	0.039
+MH828495	MH828495.1	MH828495	2014-07-28	Asia	Vietnam			Homo sapiens	2022-04-16		Lu et al		Lu,L., Robertson,G., Ashworth,J., Pham Hong,A., Shi,T., Ivens,A., Thwaites,G., Baker,S., Woolhouse,M.		1.0	1.0	0.999
+ON237251	ON237251.1	HRSV/A/Argentina/BA-HNRG-123/2015	2015-05-27	South America	Argentina	Buenos Aires	Tortuguitas	Homo sapiens	2023-02-11		Goya et al		Goya,S., Lucion,M.F., Shilts,M.H., Juarez,M.D.V., Gentile,A., Mistchenko,A.S., Viegas,M., Das,S.R.		1.0	1.0	0.998
+KY865238	KY865238.1	#RSVA/Eg/BSU-28/2015	2015-03-08	Africa	Egypt	Giza Governorate		Homo sapiens	2018-01-31		Abdel-Moneim et al		Abdel-Moneim,A.S., Soliman,M.S., Kamel,M.M., El-Kholy,A.A.		0.373	0.0	0.042
+MG014704	MG014704.1	MG014704	2015-07-13	Africa	Nigeria			Homo sapiens	2018-02-21		Ogunsemowo et al		Ogunsemowo,O., Olaleye,D.O., Odaibo,G.N., Ogunsemowo,O.S.		0.0	0.27	0.017
+OQ276401	OQ276401.1	A_TX_2028_2016_21	2016-02-03	North America	USA	Texas		Homo sapiens	2023-03-05		Wilkins et al		Wilkins,D., Langedijk,A.C., Lebbink,R.J., Morehouse,C.A., Abram,M.E., Ahani,B., Aksyuk,A.A., Baraldi,E., Brady,T., Chen,A.T., Chi,H., Choi,E.H., Cohen,R., Danilenko,D.M., Gopalakrishnan,V., Greenough,A., Heikkinen,T., Hosoya,M., Keller,C., Kelly,E.J., Kragten-Tabatabaie,L., Martinon-Torres,F., Mascarenas-de Los Santos,A.H., Nunes,M.C., Palomino,M.A., Papenburg,J., Pernica,J.M., Richmond,P., Stein,R.T., Tuffy,K.M., Verwey,C., Esser,M.T., Tabor,D.E., Bont,L.J.		1.0	0.0	0.114
+MH687110	MH687110.1	RSVA/Lebanon/16LB16/2017	2017-XX-XX	Asia	Lebanon			Homo sapiens	2019-01-01		Abou-El-Hassan et al		Abou-El-Hassan,H., Zaraket,H.		0.08	0.0	0.009
+MN068343	MN068343.1	8133	2018-XX-XX	Africa	Tunisia			Homo sapiens	2020-06-30		Ataoui et al		Ataoui,I., Jerbi,A., BenHamida-Rebai,M., Ben Hadj Fredj,M., Fodha,I., Bennour,H., Hammouda,H., Khlifa,M., Brini,I., Boussoffara,R., Boussetta,K., Abroug,S., Trabelsi,A.		0.0	0.27	0.017
+OQ261747	OQ261747.1	hRSV/A/Austria/MUW1228283/2020	2020-02-28	Europe	Austria			Homo sapiens	2023-02-19		Redlberger-Fritz et al		Redlberger-Fritz,M., Springer,D.N., Aberle,S.W., Camp,J.V., Aberle,J.H.		1.0	1.0	0.994
+LC712486	LC712486.1	Fukushima/RSVA/H-775/2020	2020-01-14	Asia	Japan	Fukushima		Homo sapiens	2023-02-02		Ono et al		Ono,T., Hashimoto,K., Norito,S., Kume,Y., Chishiki,M., Okabe,H., Sato,M., Aso,J., Sada,M., Mochizuki,I., Mashiyama,F., Ishibashi,N., Suziki,S., Sakuma,H., Takeda,M., Shirato,K., Kimura,H., Hosoya,M., Chisiki,M.		0.0	0.27	0.017
+OQ275988	OQ275988.1	520103021	2020-09-02	North America	Mexico			Homo sapiens	2023-03-05		Wilkins et al		Wilkins,D., Langedijk,A.C., Lebbink,R.J., Morehouse,C.A., Abram,M.E., Ahani,B., Aksyuk,A.A., Baraldi,E., Brady,T., Chen,A.T., Chi,H., Choi,E.H., Cohen,R., Danilenko,D.M., Gopalakrishnan,V., Greenough,A., Heikkinen,T., Hosoya,M., Keller,C., Kelly,E.J., Kragten-Tabatabaie,L., Martinon-Torres,F., Mascarenas-de Los Santos,A.H., Nunes,M.C., Palomino,M.A., Papenburg,J., Pernica,J.M., Richmond,P., Stein,R.T., Tuffy,K.M., Verwey,C., Esser,M.T., Tabor,D.E., Bont,L.J.		1.0	0.0	0.114
+OQ276183	OQ276183.1	270104034	2021-02-21	Africa	South Africa			Homo sapiens	2023-03-05		Wilkins et al		Wilkins,D., Langedijk,A.C., Lebbink,R.J., Morehouse,C.A., Abram,M.E., Ahani,B., Aksyuk,A.A., Baraldi,E., Brady,T., Chen,A.T., Chi,H., Choi,E.H., Cohen,R., Danilenko,D.M., Gopalakrishnan,V., Greenough,A., Heikkinen,T., Hosoya,M., Keller,C., Kelly,E.J., Kragten-Tabatabaie,L., Martinon-Torres,F., Mascarenas-de Los Santos,A.H., Nunes,M.C., Palomino,M.A., Papenburg,J., Pernica,J.M., Richmond,P., Stein,R.T., Tuffy,K.M., Verwey,C., Esser,M.T., Tabor,D.E., Bont,L.J.		1.0	0.0	0.114
+OQ261752	OQ261752.1	hRSV/A/Austria/MUW1561554/2022	2022-10-27	Europe	Austria			Homo sapiens	2023-02-19		Redlberger-Fritz et al		Redlberger-Fritz,M., Springer,D.N., Aberle,S.W., Camp,J.V., Aberle,J.H.		1.0	1.0	0.997
+OR048925	OR048925.1	Sapienza:230133DR	2023-01-XX	Europe	Italy				2023-07-04		Pierangeli et al		Pierangeli,A.		0.0	0.395	0.025