Conditionally include upload rule

This change allows the workflow to run when `s3_dst` is not defined, since the upload rule requires it to be defined.
nextstrain · Sep 14, 2023 · 3046bf9 · 3046bf9
1 parent 4ecf498
commit 3046bf9
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/ingest/Snakefile b/ingest/Snakefile
@@ -47,6 +47,7 @@ include: "workflow/snakemake_rules/fetch_sequences.smk"
 
 include: "workflow/snakemake_rules/transform.smk"
 
-include: "workflow/snakemake_rules/upload.smk"
+if "s3_dst" in config:
+    include: "workflow/snakemake_rules/upload.smk"
 
 include: "workflow/snakemake_rules/sort.smk"