Outlier detection and robust estimation #51
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| workflow_dispatch: | |
| jobs: | |
| linter-check: | |
| name: Lint code | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| # Full git history is needed to get a proper | |
| # list of changed files within `super-linter` | |
| fetch-depth: 0 | |
| - name: Lint code | |
| uses: github/super-linter/slim@v4 | |
| env: | |
| LINTER_RULES_PATH: . | |
| DEFAULT_BRANCH: master | |
| VALIDATE_ALL_CODEBASE: false | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| FILTER_REGEX_INCLUDE: ./pymultifracs/*.py | |
| VALIDATE_PYTHON_FLAKE8: true | |
| VALIDATE_PYTHON_PYLINT: true | |
| test-suite: | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| runs-on: ${{ matrix.os }} | |
| needs: linter-check | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get Date | |
| id: get-date | |
| run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT | |
| shell: bash | |
| # - name: Cache conda | |
| # uses: actions/cache@v2 | |
| # env: | |
| # CACHE_NUMBER: 0 | |
| # with: | |
| # path: ~/conda_pkgs_dir | |
| # key: | |
| # ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ | |
| # hashFiles('env.yml') }} | |
| - name: Setup python ${{ matrix.python-version }} with mamba | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: meta.yml | |
| activate-environment: pymultifracs | |
| mamba-version: "*" | |
| - name: Testing | |
| run: | | |
| mamba install numpy scipy pywavelets seaborn numba statsmodels pytest pytest-xdist pytest-cov tqdm joblib | |
| pip install -e .[bootstrap,robust] | |
| pytest -n auto -x --cov=./ --cov-report=xml | |
| - name: Upload coverage | |
| if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11' }} | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./coverage.xml # optional | |
| name: codecov-umbrella # optional | |
| fail_ci_if_error: false # optional (default = false) | |
| verbose: true # optional (default = false) |