CellBuild topology page easily crashes when deleting sections with continuous create on

[nrnhines]

At the last NEURON course, some users experienced issues with deleting sections in cell builder with continuous create on.
With this PR, the topology page now seems robust for all operations with continuous create.

There are likely some accumulating memory leaks during CellBuild usage and left over subsidiary objects when a CellBuild is closed. Those should be cleaned up in a separate pr.

The test_secref.py covers 97% of secref.cpp

When this PR is merged, it should be cherry picked into release/8.2

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 67.35%. Comparing base (e67effd) to head (53b87f7).

Additional details and impacted files

@@            Coverage Diff             @@
##           master    #3005      +/-   ##
==========================================
+ Coverage   67.26%   67.35%   +0.09%     
==========================================
  Files         573      573              
  Lines      104927   104936       +9     
==========================================
+ Hits        70576    70684     +108     
+ Misses      34351    34252      -99     

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[azure-pipelines]

✔️ eb5a542 -> Azure artifacts URL

[nrnhines]

The CI documentation error is

TypeError: canonicalize_version() got an unexpected keyword argument 'strip_trailing_zero'

I presume this will go away after a near future merge from master.

There is CI ubuntu error

ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined)

92 - rxdmod_tests::rxd_tests (Failed)

test/rxd/test_parameter_reaction.py .                                    [ 83%]
4681
test/rxd/test_pltvar.py F                                                [ 84%]

I'm not familiar with the diagnostic process in this area. My presumption is that it is not related to this PR.

[azure-pipelines]

✔️ 6321177 -> Azure artifacts URL

[nrnhines]

@pramodk
ci/gitlab/bbpgitlab.epfl.ch — Pipeline failed on GitLab
However, all the status checkmarks in bbpbuildbot above are green. Is everything in fact OK? If so, please approve this PR.

[nrnhines]

I just noticed a comment by @1uc at
#3037 (comment)
Is the gitlab failure an example of that temporary Sonata issue?
edit: Ah yes. I just saw the NEURONdev slack general message.

[1uc]

Yes, this is the same issue. The pipeline that fails is called blueconfigs and it's not covered by the checkmarks. That's likely because blueconfigs is shared CI between several projects: NEURON, NMODL and neurodamus. Therefore, I think it was never taught to "report back" correctly for each of the three projects.

Rerunning should make CI go green again.

[azure-pipelines]

✔️ 0b8fc13 -> Azure artifacts URL

[azure-pipelines]

✔️ d6ac77e -> Azure artifacts URL

[azure-pipelines]

✔️ 34c8339 -> Azure artifacts URL

[azure-pipelines]

✔️ a8f7566 -> Azure artifacts URL

[pramodk]

I have retriggered blueconfig CI. Hopefully, that will be green. As this is reviewed/discussed, feel free to merge once gitlab will done.

[bbpbuildbot]

Logfiles from GitLab pipeline #230213 (:no_entry:) have been uploaded here!

Status and direct links:

• ✅ mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]
• ⛔ spack_setup
• ⏩ build:nmodl
• ⏩ build:neuron:nmodl:intel:legacy
• ⏩ build:neuron:nmodl:intel:shared
• ⏩ build:neuron:nmodl:nvhpc:acc:legacy
• ⏩ build:neuron:nmodl:nvhpc:acc:shared
• ⏩ build:neuron:nmodl:nvhpc:omp:legacy
• ⏩ build:neuron:nmodl:nvhpc:omp
• ⏩ test:neuron:nmodl:intel:legacy
• ⏩ test:neuron:nmodl:intel:shared
• ⏩ test:neuron:nmodl:nvhpc:acc:legacy
• ⏩ test:neuron:nmodl:nvhpc:acc:shared
• ⏩ test:neuron:nmodl:nvhpc:omp:legacy
• ⏩ test:neuron:nmodl:nvhpc:omp

[azure-pipelines]

✔️ d7d465c -> Azure artifacts URL

[azure-pipelines]

✔️ 53b87f7 -> Azure artifacts URL

[nrnhines]

@pramodk Can you review? It's ready to merge as far as I can see.

[sonarcloud]

Quality Gate passed

Issues
1 New issue
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarCloud

[azure-pipelines]

✔️ 436c87c -> Azure artifacts URL