treeset: replace sparse13 by eigen #9095
Triggered via pull request
October 24, 2024 08:19
alkino
Status
Cancelled
Total duration
8m 46s
Artifacts
–
Annotations
25 errors and 65 warnings
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ubuntu-20.04 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Process completed with exit code 1.
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ubuntu-20.04 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
Process completed with exit code 1.
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ubuntu-20.04 - setuptools (CC=gcc-9 CXX=g++-9)
Process completed with exit code 1.
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ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined):
src/nrncvode/occvode.cpp#L352
member access into incomplete type 'OcSparseMatrix'
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ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined)
Process completed with exit code 1.
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ubuntu-20.04 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Process completed with exit code 1.
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ubuntu-20.04 - cmake (CC=gcc-10 CXX=g++-10)
Process completed with exit code 1.
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ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=addressaddress)
Process completed with exit code 1.
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macOS-12 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Process completed with exit code 1.
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ubuntu-20.04 - cmake (CC=gcc-10 CXX=g++-10)
Process completed with exit code 1.
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macOS-14 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressthread)
Canceling since a higher priority waiting request for 'NEURON CI-cornu/sparse13_treeset_2' exists
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macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DNMODL_SANITIZERS=addressaddress)
Canceling since a higher priority waiting request for 'NEURON CI-cornu/sparse13_treeset_2' exists
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macOS-12 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Canceling since a higher priority waiting request for 'NEURON CI-cornu/sparse13_treeset_2' exists
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macOS-12 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
The operation was canceled.
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macOS-12 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
Canceling since a higher priority waiting request for 'NEURON CI-cornu/sparse13_treeset_2' exists
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macOS-12 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
The operation was canceled.
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
Canceling since a higher priority waiting request for 'NEURON CI-cornu/sparse13_treeset_2' exists
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
The operation was canceled.
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
Canceling since a higher priority waiting request for 'NEURON CI-cornu/sparse13_treeset_2' exists
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
The operation was canceled.
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ubuntu-24.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_MPI=OFF -DCORENRN_ENABLE_OPENMP=OFF -DNRN_ENABLE_RX3D=OFFthread)
Canceling since a higher priority waiting request for 'NEURON CI-cornu/sparse13_treeset_2' exists
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macOS-12 - setuptools (CC=gcc-9 CXX=g++-9)
Canceling since a higher priority waiting request for 'NEURON CI-cornu/sparse13_treeset_2' exists
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macOS-12 - setuptools (CC=gcc-9 CXX=g++-9)
The operation was canceled.
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Final CI
Process completed with exit code 1.
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ubuntu-20.04 - setuptools (CC=gcc-9 CXX=g++-9)
Cache save failed.
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ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNMODL_SANITIZERS=undefinedundefined):
src/nrnpython/nrnpython.cpp#L199
'Py_NoSiteFlag' is deprecated [-Wdeprecated-declarations]
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macOS-12 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
A brownout will take place on November 4, 14:00 UTC - November 5, 00:00 UTC to raise awareness of the upcoming macOS-12 environment removal. For more details, see https://github.com/actions/runner-images/issues/10721
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macOS-12 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
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macOS-12 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
doxygen 1.12.0 is already installed and up-to-date.
To reinstall 1.12.0, run:
brew reinstall doxygen
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macOS-12 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
brew reinstall bison
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macOS-12 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
ninja 1.12.1 is already installed and up-to-date.
To reinstall 1.12.1, run:
brew reinstall ninja
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macOS-12 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
xz 5.6.2 is already installed and up-to-date.
To reinstall 5.6.2, run:
brew reinstall xz
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macOS-12 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
autoconf 2.72 is already installed and up-to-date.
To reinstall 2.72, run:
brew reinstall autoconf
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macOS-12 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
automake 1.17 is already installed and up-to-date.
To reinstall 1.17, run:
brew reinstall automake
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macOS-12 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
libtool 2.4.7 is already installed and up-to-date.
To reinstall 2.4.7, run:
brew reinstall libtool
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macOS-12 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
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macOS-12 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
You are using macOS 12.
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Do not create any issues about this on Homebrew's GitHub repositories.
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macOS-12 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
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macOS-12 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
doxygen 1.12.0 is already installed and up-to-date.
To reinstall 1.12.0, run:
brew reinstall doxygen
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macOS-12 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
brew reinstall bison
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macOS-12 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
ninja 1.12.1 is already installed and up-to-date.
To reinstall 1.12.1, run:
brew reinstall ninja
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macOS-12 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
xz 5.6.2 is already installed and up-to-date.
To reinstall 5.6.2, run:
brew reinstall xz
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macOS-12 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
autoconf 2.72 is already installed and up-to-date.
To reinstall 2.72, run:
brew reinstall autoconf
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macOS-12 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
automake 1.17 is already installed and up-to-date.
To reinstall 1.17, run:
brew reinstall automake
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macOS-12 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
libtool 2.4.7 is already installed and up-to-date.
To reinstall 2.4.7, run:
brew reinstall libtool
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macOS-12 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-9 CXX=g++-9)
You are using macOS 12.
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macOS-12 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
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macOS-12 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
doxygen 1.12.0 is already installed and up-to-date.
To reinstall 1.12.0, run:
brew reinstall doxygen
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macOS-12 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
brew reinstall bison
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macOS-12 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
ninja 1.12.1 is already installed and up-to-date.
To reinstall 1.12.1, run:
brew reinstall ninja
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macOS-12 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
xz 5.6.2 is already installed and up-to-date.
To reinstall 5.6.2, run:
brew reinstall xz
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macOS-12 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
autoconf 2.72 is already installed and up-to-date.
To reinstall 2.72, run:
brew reinstall autoconf
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macOS-12 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
automake 1.17 is already installed and up-to-date.
To reinstall 1.17, run:
brew reinstall automake
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macOS-12 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
libtool 2.4.7 is already installed and up-to-date.
To reinstall 2.4.7, run:
brew reinstall libtool
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macOS-12 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
You are using macOS 12.
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macOS-12 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
You are using macOS 12.
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
doxygen 1.12.0 is already installed and up-to-date.
To reinstall 1.12.0, run:
brew reinstall doxygen
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
brew reinstall bison
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
ninja 1.12.1 is already installed and up-to-date.
To reinstall 1.12.1, run:
brew reinstall ninja
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
xz 5.6.2 is already installed and up-to-date.
To reinstall 5.6.2, run:
brew reinstall xz
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
autoconf 2.72 is already installed and up-to-date.
To reinstall 2.72, run:
brew reinstall autoconf
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
automake 1.17 is already installed and up-to-date.
To reinstall 1.17, run:
brew reinstall automake
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
libtool 2.4.7 is already installed and up-to-date.
To reinstall 2.4.7, run:
brew reinstall libtool
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|
macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
You are using macOS 12.
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It is expected behaviour that some formulae will fail to build in this old version.
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You may ask for help in Homebrew's discussions but are unlikely to receive a response.
Try to figure out the problem yourself and submit a fix as a pull request.
We will review it but may or may not accept it.
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
You are using macOS 12.
We (and Apple) do not provide support for this old version.
It is expected behaviour that some formulae will fail to build in this old version.
It is expected behaviour that Homebrew will be buggy and slow.
Do not create any issues about this on Homebrew's GitHub repositories.
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We will review it but may or may not accept it.
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
Cache save failed.
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
doxygen 1.12.0 is already installed and up-to-date.
To reinstall 1.12.0, run:
brew reinstall doxygen
|
|
macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
brew reinstall bison
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
ninja 1.12.1 is already installed and up-to-date.
To reinstall 1.12.1, run:
brew reinstall ninja
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|
macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
xz 5.6.2 is already installed and up-to-date.
To reinstall 5.6.2, run:
brew reinstall xz
|
|
macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
autoconf 2.72 is already installed and up-to-date.
To reinstall 2.72, run:
brew reinstall autoconf
|
|
macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
automake 1.17 is already installed and up-to-date.
To reinstall 1.17, run:
brew reinstall automake
|
|
macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
libtool 2.4.7 is already installed and up-to-date.
To reinstall 2.4.7, run:
brew reinstall libtool
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|
macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
You are using macOS 12.
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Do not ask for help from Homebrew or its maintainers on social media.
You may ask for help in Homebrew's discussions but are unlikely to receive a response.
Try to figure out the problem yourself and submit a fix as a pull request.
We will review it but may or may not accept it.
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macOS-12 - cmake (CC=gcc-10 CXX=g++-10)
You are using macOS 12.
We (and Apple) do not provide support for this old version.
It is expected behaviour that some formulae will fail to build in this old version.
It is expected behaviour that Homebrew will be buggy and slow.
Do not create any issues about this on Homebrew's GitHub repositories.
Do not create any issues even if you think this message is unrelated.
Any opened issues will be immediately closed without response.
Do not ask for help from Homebrew or its maintainers on social media.
You may ask for help in Homebrew's discussions but are unlikely to receive a response.
Try to figure out the problem yourself and submit a fix as a pull request.
We will review it but may or may not accept it.
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macOS-12 - setuptools (CC=gcc-9 CXX=g++-9)
Cache save failed.
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macOS-12 - setuptools (CC=gcc-9 CXX=g++-9)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
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macOS-12 - setuptools (CC=gcc-9 CXX=g++-9)
doxygen 1.12.0 is already installed and up-to-date.
To reinstall 1.12.0, run:
brew reinstall doxygen
|
|
macOS-12 - setuptools (CC=gcc-9 CXX=g++-9)
bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
brew reinstall bison
|
|
macOS-12 - setuptools (CC=gcc-9 CXX=g++-9)
ninja 1.12.1 is already installed and up-to-date.
To reinstall 1.12.1, run:
brew reinstall ninja
|
|
macOS-12 - setuptools (CC=gcc-9 CXX=g++-9)
xz 5.6.2 is already installed and up-to-date.
To reinstall 5.6.2, run:
brew reinstall xz
|
|
macOS-12 - setuptools (CC=gcc-9 CXX=g++-9)
autoconf 2.72 is already installed and up-to-date.
To reinstall 2.72, run:
brew reinstall autoconf
|
|
macOS-12 - setuptools (CC=gcc-9 CXX=g++-9)
automake 1.17 is already installed and up-to-date.
To reinstall 1.17, run:
brew reinstall automake
|
|
macOS-12 - setuptools (CC=gcc-9 CXX=g++-9)
libtool 2.4.7 is already installed and up-to-date.
To reinstall 2.4.7, run:
brew reinstall libtool
|
|
macOS-12 - setuptools (CC=gcc-9 CXX=g++-9)
You are using macOS 12.
We (and Apple) do not provide support for this old version.
It is expected behaviour that some formulae will fail to build in this old version.
It is expected behaviour that Homebrew will be buggy and slow.
Do not create any issues about this on Homebrew's GitHub repositories.
Do not create any issues even if you think this message is unrelated.
Any opened issues will be immediately closed without response.
Do not ask for help from Homebrew or its maintainers on social media.
You may ask for help in Homebrew's discussions but are unlikely to receive a response.
Try to figure out the problem yourself and submit a fix as a pull request.
We will review it but may or may not accept it.
|
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macOS-12 - setuptools (CC=gcc-9 CXX=g++-9)
You are using macOS 12.
We (and Apple) do not provide support for this old version.
It is expected behaviour that some formulae will fail to build in this old version.
It is expected behaviour that Homebrew will be buggy and slow.
Do not create any issues about this on Homebrew's GitHub repositories.
Do not create any issues even if you think this message is unrelated.
Any opened issues will be immediately closed without response.
Do not ask for help from Homebrew or its maintainers on social media.
You may ask for help in Homebrew's discussions but are unlikely to receive a response.
Try to figure out the problem yourself and submit a fix as a pull request.
We will review it but may or may not accept it.
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