Process tutorial notebooks

neuromatch · Dec 11, 2023 · d723c5c · d723c5c
1 parent 6023b9e
commit d723c5c
Show file tree

Hide file tree

Showing 21 changed files with 68 additions and 446 deletions.
diff --git a/tutorials/Bonus_BonusContent/Bonus_Intro.ipynb b/tutorials/Bonus_BonusContent/Bonus_Intro.ipynb
@@ -210,7 +210,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/Bonus_Outro.ipynb b/tutorials/Bonus_BonusContent/Bonus_Outro.ipynb
@@ -196,7 +196,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/Bonus_Tutorial1.ipynb b/tutorials/Bonus_BonusContent/Bonus_Tutorial1.ipynb
@@ -2307,7 +2307,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/Bonus_Tutorial2.ipynb b/tutorials/Bonus_BonusContent/Bonus_Tutorial2.ipynb
@@ -1730,7 +1730,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/Bonus_Tutorial3.ipynb b/tutorials/Bonus_BonusContent/Bonus_Tutorial3.ipynb
@@ -2260,7 +2260,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/instructor/Bonus_Intro.ipynb b/tutorials/Bonus_BonusContent/instructor/Bonus_Intro.ipynb
@@ -34,7 +34,7 @@
    "source": [
     "## Overview\n",
     "\n",
-    "This is a bonus day on Autoencoders. Autoencoders are a form of deep neural network that performs nonlinear dimensionality reduction."
+    "This is an example bonus day on \"topic\". Short topic desctription goes here. Below is example content from our comp neuro course. Please free to use it as a template for your Bonus Tutorials."
    ]
   },
   {
@@ -210,7 +210,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/instructor/Bonus_Outro.ipynb b/tutorials/Bonus_BonusContent/instructor/Bonus_Outro.ipynb
@@ -196,7 +196,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/instructor/Bonus_Tutorial1.ipynb b/tutorials/Bonus_BonusContent/instructor/Bonus_Tutorial1.ipynb
@@ -2313,7 +2313,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/instructor/Bonus_Tutorial2.ipynb b/tutorials/Bonus_BonusContent/instructor/Bonus_Tutorial2.ipynb
@@ -1734,7 +1734,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/instructor/Bonus_Tutorial3.ipynb b/tutorials/Bonus_BonusContent/instructor/Bonus_Tutorial3.ipynb
@@ -2262,7 +2262,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/static/Bonus_Tutorial1_Solution_9d6c1017_11.png b/tutorials/Bonus_BonusContent/static/Bonus_Tutorial1_Solution_9d6c1017_11.png
diff --git a/tutorials/Bonus_BonusContent/static/Bonus_Tutorial1_Solution_c05ddd88_0.png b/tutorials/Bonus_BonusContent/static/Bonus_Tutorial1_Solution_c05ddd88_0.png
diff --git a/tutorials/Bonus_BonusContent/student/Bonus_Intro.ipynb b/tutorials/Bonus_BonusContent/student/Bonus_Intro.ipynb
@@ -34,7 +34,7 @@
    "source": [
     "## Overview\n",
     "\n",
-    "This is a bonus day on Autoencoders. Autoencoders are a form of deep neural network that performs nonlinear dimensionality reduction."
+    "This is an example bonus day on \"topic\". Short topic desctription goes here. Below is example content from our comp neuro course. Please free to use it as a template for your Bonus Tutorials."
    ]
   },
   {
@@ -210,7 +210,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/student/Bonus_Outro.ipynb b/tutorials/Bonus_BonusContent/student/Bonus_Outro.ipynb
@@ -196,7 +196,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/student/Bonus_Tutorial1.ipynb b/tutorials/Bonus_BonusContent/student/Bonus_Tutorial1.ipynb
@@ -1169,11 +1169,11 @@
     "execution": {}
    },
    "source": [
-    "[*Click for solution*](https://github.com/NeuromatchAcademy/course-content/tree/main/tutorials/Bonus_Autoencoders/solutions/Bonus_Tutorial1_Solution_c05ddd88.py)\n",
+    "[*Click for solution*](https://github.com/neuromatch/course-content-template/tree/main/tutorials/Bonus_BonusContent/solutions/Bonus_Tutorial1_Solution_c05ddd88.py)\n",
     "\n",
     "*Example output:*\n",
     "\n",
-    "<img alt='Solution hint' align='left' width=1127.0 height=578.0 src=https://raw.githubusercontent.com/NeuromatchAcademy/course-content/main/tutorials/Bonus_Autoencoders/static/Bonus_Tutorial1_Solution_c05ddd88_0.png>\n",
+    "<img alt='Solution hint' align='left' width=1132.0 height=575.0 src=https://raw.githubusercontent.com/neuromatch/course-content-template/main/tutorials/Bonus_BonusContent/static/Bonus_Tutorial1_Solution_c05ddd88_0.png>\n",
     "\n"
    ]
   },
@@ -1366,7 +1366,7 @@
     "execution": {}
    },
    "source": [
-    "[*Click for solution*](https://github.com/NeuromatchAcademy/course-content/tree/main/tutorials/Bonus_Autoencoders/solutions/Bonus_Tutorial1_Solution_e7182519.py)\n",
+    "[*Click for solution*](https://github.com/neuromatch/course-content-template/tree/main/tutorials/Bonus_BonusContent/solutions/Bonus_Tutorial1_Solution_e7182519.py)\n",
     "\n"
    ]
   },
@@ -2014,11 +2014,11 @@
     "execution": {}
    },
    "source": [
-    "[*Click for solution*](https://github.com/NeuromatchAcademy/course-content/tree/main/tutorials/Bonus_Autoencoders/solutions/Bonus_Tutorial1_Solution_9d6c1017.py)\n",
+    "[*Click for solution*](https://github.com/neuromatch/course-content-template/tree/main/tutorials/Bonus_BonusContent/solutions/Bonus_Tutorial1_Solution_9d6c1017.py)\n",
     "\n",
     "*Example output:*\n",
     "\n",
-    "<img alt='Solution hint' align='left' width=775.0 height=575.0 src=https://raw.githubusercontent.com/NeuromatchAcademy/course-content/main/tutorials/Bonus_Autoencoders/static/Bonus_Tutorial1_Solution_9d6c1017_11.png>\n",
+    "<img alt='Solution hint' align='left' width=775.0 height=575.0 src=https://raw.githubusercontent.com/neuromatch/course-content-template/main/tutorials/Bonus_BonusContent/static/Bonus_Tutorial1_Solution_9d6c1017_11.png>\n",
     "\n"
    ]
   },
@@ -2254,7 +2254,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/student/Bonus_Tutorial2.ipynb b/tutorials/Bonus_BonusContent/student/Bonus_Tutorial2.ipynb
@@ -1035,7 +1035,7 @@
     "execution": {}
    },
    "source": [
-    "[*Click for solution*](https://github.com/NeuromatchAcademy/course-content/tree/main/tutorials/Bonus_Autoencoders/solutions/Bonus_Tutorial2_Solution_0d50004f.py)\n",
+    "[*Click for solution*](https://github.com/neuromatch/course-content-template/tree/main/tutorials/Bonus_BonusContent/solutions/Bonus_Tutorial2_Solution_0d50004f.py)\n",
     "\n"
    ]
   },
@@ -1356,7 +1356,7 @@
     "execution": {}
    },
    "source": [
-    "[*Click for solution*](https://github.com/NeuromatchAcademy/course-content/tree/main/tutorials/Bonus_Autoencoders/solutions/Bonus_Tutorial2_Solution_f82e3b9c.py)\n",
+    "[*Click for solution*](https://github.com/neuromatch/course-content-template/tree/main/tutorials/Bonus_BonusContent/solutions/Bonus_Tutorial2_Solution_f82e3b9c.py)\n",
     "\n"
    ]
   },
@@ -1661,7 +1661,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/Bonus_BonusContent/student/Bonus_Tutorial3.ipynb b/tutorials/Bonus_BonusContent/student/Bonus_Tutorial3.ipynb
@@ -1916,7 +1916,7 @@
     "execution": {}
    },
    "source": [
-    "[*Click for solution*](https://github.com/NeuromatchAcademy/course-content/tree/main/tutorials/Bonus_Autoencoders/solutions/Bonus_Tutorial3_Solution_22e2c431.py)\n",
+    "[*Click for solution*](https://github.com/neuromatch/course-content-template/tree/main/tutorials/Bonus_BonusContent/solutions/Bonus_Tutorial3_Solution_22e2c431.py)\n",
     "\n"
    ]
   },
@@ -2247,7 +2247,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.17"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/tutorials/README.md b/tutorials/README.md
@@ -8,10 +8,6 @@
 
 ## W1D1 - Instructions
 
-[YouTube Playlist](https://www.youtube.com/playlist?list=PLkBQOLLbi18ObAiSOZ42YBwOQIKNvspeI)
-
-Slides: [Intro](https://mfr.ca-1.osf.io/render?url=https://osf.io/rbx2a/?direct%26mode=render%26action=download%26mode=render) | [Tutorials](https://mfr.ca-1.osf.io/render?url=https://osf.io/6dxwe/?direct%26mode=render%26action=download%26mode=render) | [DaySummary](https://mfr.ca-1.osf.io/render?url=https://osf.io/jdumz/?direct%26mode=render%26action=download%26mode=render) | [Outro](https://mfr.ca-1.osf.io/render?url=https://osf.io/9hkg2/?direct%26mode=render%26action=download%26mode=render) | [Reading](https://mfr.ca-1.osf.io/render?url=https://osf.io/2esh5/?direct%26mode=render%26action=download%26mode=render) | [TA](https://mfr.ca-1.osf.io/render?url=https://osf.io/5vj73/?direct%26mode=render%26action=download%26mode=render)
-
 |   | Run | Run | View |
 | - | --- | --- | ---- |
 | Intro | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/neuromatch/course-content-template/blob/main/tutorials/W1D1_Instructions/W1D1_Intro.ipynb) | [![Open In kaggle](https://kaggle.com/static/images/open-in-kaggle.svg)](https://kaggle.com/kernels/welcome?src=https://raw.githubusercontent.com/neuromatch/course-content-template/main/tutorials/W1D1_Instructions/W1D1_Intro.ipynb) | [![View the notebook](https://img.shields.io/badge/render-nbviewer-orange.svg)](https://nbviewer.jupyter.org/github/neuromatch/course-content-template/blob/main/tutorials/W1D1_Instructions/W1D1_Intro.ipynb?flush_cache=true) |
@@ -29,10 +25,6 @@ Slides: [Intro](https://mfr.ca-1.osf.io/render?url=https://osf.io/rbx2a/?direct%
 
 ## W1D2 - Template
 
-[YouTube Playlist](https://www.youtube.com/playlist?list=PLkBQOLLbi18ObAiSOZ42YBwOQIKNvspeI)
-
-Slides: [Intro](https://mfr.ca-1.osf.io/render?url=https://osf.io/rbx2a/?direct%26mode=render%26action=download%26mode=render) | [Tutorials](https://mfr.ca-1.osf.io/render?url=https://osf.io/6dxwe/?direct%26mode=render%26action=download%26mode=render) | [DaySummary](https://mfr.ca-1.osf.io/render?url=https://osf.io/jdumz/?direct%26mode=render%26action=download%26mode=render) | [Outro](https://mfr.ca-1.osf.io/render?url=https://osf.io/9hkg2/?direct%26mode=render%26action=download%26mode=render) | [Reading](https://mfr.ca-1.osf.io/render?url=https://osf.io/2esh5/?direct%26mode=render%26action=download%26mode=render) | [TA](https://mfr.ca-1.osf.io/render?url=https://osf.io/5vj73/?direct%26mode=render%26action=download%26mode=render)
-
 |   | Run | Run | View |
 | - | --- | --- | ---- |
 | Intro | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/neuromatch/course-content-template/blob/main/tutorials/W1D2_Template/W1D2_Intro.ipynb) | [![Open In kaggle](https://kaggle.com/static/images/open-in-kaggle.svg)](https://kaggle.com/kernels/welcome?src=https://raw.githubusercontent.com/neuromatch/course-content-template/main/tutorials/W1D2_Template/W1D2_Intro.ipynb) | [![View the notebook](https://img.shields.io/badge/render-nbviewer-orange.svg)](https://nbviewer.jupyter.org/github/neuromatch/course-content-template/blob/main/tutorials/W1D2_Template/W1D2_Intro.ipynb?flush_cache=true) |

diff --git a/tutorials/W1D1_Instructions/W1D1_Tutorial4.ipynb b/tutorials/W1D1_Instructions/W1D1_Tutorial4.ipynb
@@ -103,7 +103,9 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "execution": {}
+   },
    "source": [
     "Steps:\n",
     "- Decide on the format for your wrap up\n",