[FIX] Filter for only `ImagingSession`s or `PhenotypicSession`s in SPARQL query #621

	name: Test

	on:
	push:
	branches:
	- main
	pull_request:
	workflow_dispatch:

	jobs:
	test:

	runs-on: ubuntu-latest

	steps:

	- uses: actions/checkout@v4
	with:
	submodules: recursive

	- name: Launch test graph
	run: docker compose up -d test_graph

	# TODO: Check if this is necessary, since the Python dependencies setup also takes some time
	- name: Sleep to allow graph setup
	uses: jakejarvis/wait-action@master
	with:
	time: '5s'

	- name: Check running containers
	run: docker ps

	- name: Set up Python 3.10
	uses: actions/setup-python@v5
	with:
	python-version: "3.10"

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install flake8
	if [ -f requirements.txt ]; then pip install -r requirements.txt; fi

	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --per-file-ignores=./app/api/models.py:F722
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics

	- name: Test with pytest
	run: \|
	coverage run -m pytest -m "integration or not integration"
	coverage lcov -o ./coverage/lcov.info
	- name: Coveralls GitHub Action
	uses: coverallsapp/[email protected]
	with:
	github-token: ${{ secrets.GITHUB_TOKEN }}

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