Add Bouhadjar sequence learning network tutorial #74
Workflow file for this run
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| on: | |
| pull_request_target: | |
| types: [opened, reopened, edited, synchronize] | |
| jobs: | |
| fork_pr_requires_review: | |
| environment: ${{ (github.event.pull_request.head.repo.full_name == github.repository && 'internal') || 'external' }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: true | |
| benchmark_fork_pr_branch: | |
| needs: fork_pr_requires_review | |
| name: Continuous Benchmarking Fork PRs with Bencher | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| persist-credentials: false | |
| - uses: bencherdev/bencher@main | |
| # Setup Python version | |
| - name: Setup Python 3.8 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.8 | |
| # Install dependencies | |
| - name: Install apt dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libltdl7-dev libgsl0-dev libncurses5-dev libreadline6-dev pkg-config | |
| sudo apt-get install python3-all-dev python3-matplotlib python3-numpy python3-scipy ipython3 | |
| # Install Python dependencies | |
| - name: Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip pytest jupyterlab matplotlib pycodestyle scipy pandas pytest-benchmark | |
| python -m pip install -r requirements.txt | |
| # Install NEST simulator | |
| - name: NEST simulator | |
| run: | | |
| python -m pip install cython | |
| echo "GITHUB_WORKSPACE = $GITHUB_WORKSPACE" | |
| NEST_SIMULATOR=$(pwd)/nest-simulator | |
| NEST_INSTALL=$(pwd)/nest_install | |
| echo "NEST_SIMULATOR = $NEST_SIMULATOR" | |
| echo "NEST_INSTALL = $NEST_INSTALL" | |
| git clone --depth=1 https://github.com/nest/nest-simulator | |
| mkdir nest_install | |
| echo "NEST_INSTALL=$NEST_INSTALL" >> $GITHUB_ENV | |
| cd nest_install | |
| cmake -DCMAKE_INSTALL_PREFIX=$NEST_INSTALL $NEST_SIMULATOR | |
| make && make install | |
| cd .. | |
| # Install NESTML (repeated) | |
| - name: Install NESTML | |
| run: | | |
| export PYTHONPATH=${{ env.PYTHONPATH }}:${{ env.NEST_INSTALL }}/lib/python3.8/site-packages | |
| #echo PYTHONPATH=`pwd` >> $GITHUB_ENV | |
| echo "PYTHONPATH=$PYTHONPATH" >> $GITHUB_ENV | |
| python setup.py install | |
| - name: Track Fork PR Benchmarks with Bencher | |
| env: | |
| LD_LIBRARY_PATH: ${{ env.NEST_INSTALL }}/lib/nest | |
| run: | | |
| echo "NEST_INSTALL = $NEST_INSTALL" | |
| LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${{ env.NEST_INSTALL }}/lib/nest bencher run \ | |
| --project nestml \ | |
| --token '${{ secrets.BENCHER_API_TOKEN }}' \ | |
| --branch '${{ github.event.number }}/merge' \ | |
| --branch-start-point '${{ github.base_ref }}' \ | |
| --branch-start-point-hash '${{ github.event.pull_request.base.sha }}' \ | |
| --branch-reset \ | |
| --github-actions "${{ secrets.GITHUB_TOKEN }}" \ | |
| --testbed ubuntu-latest \ | |
| --adapter python_pytest \ | |
| --file results.json \ | |
| --err \ | |
| 'LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${{ env.NEST_INSTALL }}/lib/nest python3 -m pytest --benchmark-json results.json -s $GITHUB_WORKSPACE/tests/nest_continuous_benchmarking/test_nest_continuous_benchmarking.py' | |
| - name: Setup tmate session | |
| if: ${{ failure() }} | |
| uses: mxschmitt/action-tmate@v3 |