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1. pn2.0-mlst-databases pn2.0-mlst-databases Public

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2. HMAS-QC-Pipeline2 HMAS-QC-Pipeline2 Public

   An analysis pipeline for initial quality control and denoising of highly-multiplexed amplicon sequencing (HMAS) data, now without using mothur (as was used in the previous version)

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3. datasets datasets Public

   Benchmark and toy datasets

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4. trapical trapical Public

   trapical: trapical rapidly aligns Pulsenet islolate core alleles

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5. HMAS-QC-Pipeline HMAS-QC-Pipeline Public

   Forked from jessicarowell/HMAS-QC-Pipeline

   A pipeline for performing quality control on HMAS data, in preparation for downstream MLST-like or AMR-like analyses.

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6. AlleleCodes AlleleCodes Public

   Forked from gmaniscoo/AlleleCodes

   Python script(s) for assigning allele codes under current PulseNet nomenclature system in BioNumerics but as a command-line executable without BioNumerics dependencies

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