Replace the warning log with a warnings.warn instead.

[janwijbrand]

As a result the warning is only issued once by default. A developer can choose to configure what warnings are filtered how.

Rationale: When using fhir.resources from an application framework such as fastapi, that expects to be able to use the Pydantic APIs for dict() and json() etc. the log will be "spammed" with warnings. The developer that uses the framework though has very limited control over this short of re configuring the log levels.

[janwijbrand]

Address #90 with an alternative approach. See #140

[codecov-commenter]

Codecov Report

All modified lines are covered by tests ✅

Comparison is base (1fd6ea4) 99.97% compared to head (6b197cd) 99.97%.

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Additional details and impacted files

@@           Coverage Diff           @@
##             main     #138   +/-   ##
=======================================
  Coverage   99.97%   99.97%           
=======================================
  Files         302      302           
  Lines       60584    60584           
=======================================
  Hits        60566    60566           
  Misses         18       18           

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[nazrulworld]

Thanks for your PR, it seems good but can you check Travis build for python 3.10

[janwijbrand]

Thanks for your PR, it seems good but can you check Travis build for python 3.10

I did have a look, but I'm a little bit at a loss here...

I'm tried run mypy locally: I get a ton of errors that I don't see on travis. Yet, the error on travis I don't see locally. The error seems to occur or at least is related to numpy. AFAICS I don't think fhir.resources itself depends on numpy. I think numpy is a (test?) dependency for orjson.

Perhaps you can trigger a travis build of the main branch manually (I don't seem to have that permission of travis) to see if the error also occurs there?

If you have any other idea, let me know!

[nazrulworld]

Thanks for your PR, it seems good but can you check Travis build for python 3.10

I did have a look, but I'm a little bit at a loss here...

I'm tried run mypy locally: I get a ton of errors that I don't see on travis. Yet, the error on travis I don't see locally. The error seems to occur or at least is related to numpy. AFAICS I don't think fhir.resources itself depends on numpy. I think numpy is a (test?) dependency for orjson.

Perhaps you can trigger a travis build of the main branch manually (I don't seem to have that permission of travis) to see if the error also occurs there?

If you have any other idea, let me know!

I am not 100% sure but the most provably, because of mypy version in your local, you are seeing too many errors but not in travis. for example if look at inside setup.py //"mypy" + (PY_VERSION_11_OR_LATER and ">=0.991" or "==0.812")//

I can also look that linting error, but unfortunately I am too busy right now :)

[janwijbrand]

I am not 100% sure but the most provably, because of mypy version in your local, you are seeing too many errors but not in travis. for example if look at inside setup.py //"mypy" + (PY_VERSION_11_OR_LATER and ">=0.991" or "==0.812")//

I can also look that linting error, but unfortunately I am too busy right now :)

I'll try to dig a bit further as well.

In the meantime I tried removing the warn() call from my PR to see if the Travis outcome for the mypy check was different. It wasnt. The Travis outcome as before, so it is not my code per sé that makes the mypy fail. I added the warn() code back again.