Update shapely to 2.0.5

[pyup-bot]

This PR updates shapely from 1.6.4.post2 to 2.0.5.

Changelog

2.0.5

------------------

Binary wheels on PyPI include GEOS 3.11.4 from 2024-06-05. Furthermore,
universal2 wheels are removed for macOS since both x86_64 and arm64 wheels are
provided.

Bug fixes:

- Fix Point x/y/z attributes to return Python floats (2074).
- Fix affinity for Apple silicon with NumPy 2.0 by reverting matmul, and
use direct matrix multiplication instead (2085).

2.0.4

------------------

Wheels for Python versions >= 3.9 will be compatible with the upcoming NumPy 2.0
release (as well as with supported NumPy 1.x versions).

Bug fixes:

- Fix bug in ``to_wkt`` with multiple empty Z geometries (2012).
- Fix bug in ``to_ragged_array`` for an array of Points with missing values (2034).

2.0.3

------------------

- Fix regression in the ``oriented_envelope`` ufunc to accept array-like input
in case of GEOS<3.12 (1929).
- The binary wheels are not yet compatible with a future NumPy 2.0 release,
therefore a ``numpy<2`` upper pin was added to the requirements (1972).
- Upgraded the GEOS version in the binary wheel distributions to 3.11.3.

2.0.2

------------------

Bug fixes:

- Fix regression in the (in)equality comparison (``geom1 == geom2``) using ``__eq__`` to
not ignore the z-coordinates (1732).
- Fix ``MultiPolygon()`` constructor to accept polygons without holes (1850).
- Fix ``minimum_rotated_rectangle`` (``oriented_envelope``) to always return
the minimum area solution (instead of minimum width). In practice, it will use the
GEOS implementation only for GEOS 3.12+, and for older GEOS versions fall back to the
implementation that was included in Shapely < 2 (1670).
- Fix ``from_ragged_array`` to work with read-only array input (1744).
- Fix the handling of z coordinates ``shapely.ops.substring`` (1699).

Wheels are available for Python 3.12 (and still include GEOS 3.11.2). Building
from source is now compatible with Cython 3.

For a full changelog, see
https://shapely.readthedocs.io/en/latest/release/2.x.html#version-2-0-2

2.0.1

------------------

Bug fixes:

- Fix regression in the ``Polygon()`` constructor taking a sequence of Points (1662).
- Fix regression in the geometry constructors when passing ``decimal.Decimal``
coordinate values (1707).
- Fix ``STRtree()`` to not make the passed geometry array immutable as side-effect of
the constructor (1714).
- Fix the ``directed`` keyword in ``shapely.ops.linemerge()`` (1695).

Improvements:

- Expose the function to get a matplotlib Patch object from a (Multi)Polygon (without
already plotting it) publicly as :func:`shapely.plotting.patch_from_polygon` (1704).

For a full changelog, see
https://shapely.readthedocs.io/en/latest/release/2.x.html#version-2-0-1

2.0.0

------------------

Shapely version 2.0.0 is a major release featuring a complete refactor of the
internals and new vectorized (element-wise) array operations providing
considerable performance improvements.

For a full changelog, see
https://shapely.readthedocs.io/en/latest/release/2.x.html#version-2-0-0

2.0rc3

- Added temporary support for unpickling shapely<2.0 geometries.

2.0rc1

-------------------

2.0b2

------------------

2.0b1

------------------

2.0a1

------------------

Shapely version 2.0 alpha 1 is the first of a major release featuring a
complete refactor of the internals and new vectorized (element-wise) array
operations providing considerable performance improvements. For a full
changelog, see https://shapely.readthedocs.io/en/latest/release/2.x.html#version-2-0-0

Wheels for 2.0a1 published on PyPI include GEOS 3.10.3.

1.8.5.post1

------------------------

Packaging:

Wheels are provided for Python versions 3.6-3.11 and Cython 0.29.32 is used to
generate C extension module code.

1.8.5

------------------

Packaging:

Python 3.11 wheels have been added to the matrix for all platforms.

Bug fixes:

- Assign _lgeos in the macos frozen app check, fixing a bug introduced in 1.8.2
(1528).
- An exception is now raised when nan is passed to buffer and parallel_offset,
preventing segmentation faults (1516).

1.8.4

------------------

Bug fixes:

- The new c_geom_p type caused a regression and has been removed (1487).

1.8.3

------------------

Deprecations:

The STRtree class will be changed in 2.0.0 and will not be compatible with the
class in versions 1.8.x. This change obsoletes the deprecation announcement in
1.8a3 (below).

Packaging:

Wheels for 1.8.3 published on PyPI include GEOS 3.10.3.

Bug fixes:

- The signature for GEOSMinimumClearance has been corrected, fixing an issue
affecting aarch64-darwin (1480)
- Return and arg types have been corrected and made more strict for area,
length, and distance properties.
- A new c_geom_p type has been created to replace c_void_p when calling GEOS
functions (1479).
- An incorrect polygon-line intersection (1427) has been fixed in GEOS 3.10.3,
which will be included in wheels published to PyPI.
- GEOS buffer parameters are now destroyed, fixing a memory leak (1440).

1.8.2

------------------

- Make Polygons and MultiPolygons closed by definition, like LinearRings.
Resolves 1246.
- Perform frozen app check for GEOS before conda env check on macos as we
already do on linux (1301).
- Fix leak of GEOS coordinate sequence in nearest_points reported in 1098.

1.8.1.post1

------------------------

This post-release addresses a defect in the 1.8.1 source distribution. No .c
files are included in the 1.8.1.post1 sdist and Cython is required to build and
install from source.

1.8.1

------------------

Packaging:

Wheels for 1.8.1 published on PyPI include GEOS 3.10.2. This version is the
best version of GEOS yet. Discrepancies in behavior compared to previous
versions are considered to be improvements.

For the first time, we will publish wheels for macos_arm64 (see PR 1310).

Python version support:

Shapely 1.8.1 works with Pythons 3.6-3.10.

Bug fixes:

- Require Cython >= 0.29.24 to support Python 3.10 (1224).
- Fix array_interface_base (1235).

1.8.0

features, but it is mainly about warning of the upcoming changes in 2.0.0.
Several more pre-releases before 1.8.0 are expected. See the migration guide
to Shapely 1.8 / 2.0 for more details on how to update your code
(https://shapely.readthedocs.io/en/latest/migration.html).

Python version support:

Shapely 1.8 will support only Python versions >= 3.5 (884).

Deprecations:

The following functions and geometry attributes and methods will be removed in
version 2.0.0.

- ops.cascaded_union
- geometry .empty()
- geometry .ctypes and .__array_interface__
- multi-part geometry .__len__
- setting custom attributes on geometry objects

Geometry objects will become immutable in version 2.0.0.

The STRtree class will be entirely changed in 2.0.0. The exact future API is
not yet decided, but will be decided before 1.8.0 is released.

Deprecation warnings will be emitted in 1.8a1 when any of these features are
used.

The deprecated .to_wkb() and .to_wkt() methods on the geometry objects have
been removed.

New features:

- Add a normalize() method to geometry classes, exposing the GEOSNormalize
algorithm (1090).
- Initialize STRtree with a capacity of 10 items per node (1070).
- Load libraries relocated to shapely/.libs by auditwheel versions < 3.1 or
relocated to Shapely.libs by auditwheel versions >= 3.1.
- shapely.ops.voronoi_diagram() computes the Voronoi Diagram of a geometry or
geometry collection (833, 851).
- shapely.validation.make_valid() fixes invalid geometries (883)

Bug fixes:

- For pyinstaller we now handle the case of more than one GEOS library in the
environment, such as when fiona and rasterio wheels are co-installed with
shapely (1071).
- The ops.split function now splits on touch to eliminate confusing
discrepancies between results using multi and single part splitters (1034).
- Several issues with duplication and order of vertices in ops.substring have
been fixed (1008).

Packaging:

- The wheels uploaded to PyPI will include GEOS 3.9.1.

Previous releases
-----------------

For older releases in the 1.x line, see https://shapely.readthedocs.io/en/latest/release/1.x.html

1.8rc2

-------------------

Build:

A pyproject.toml file has been added to specify build dependencies for the
_vectorized and _speedups modules (1128). To install shapely without these
build dependencies, use the features of your build tool that disable PEP 517
and 518 support.

Bug fixes:

- Part of PR 1042, which added a new primary GEOS library name to be searched
for, has been reverted by PR 1201.

1.8rc1

-------------------

Deprecations:

The almost_exact() method of BaseGeometry has been deprecated. It is confusing
and will be removed in 2.0.0. The equals_exact() method is to be used instead.

Bug fixes:

- We ensure that the _speedups module is always imported before _vectorized to
avoid an unexplained condition on Windows with Python 3.8 and 3.9 (1184).

1.8a3

------------------

Deprecations:

The STRtree class deprecation warnings have been removed. The class in 2.0.0
will be backwards compatible with the class in 1.8.0.

Bug fixes:

- The __array_interface__ raises only AttributeError, all other exceptions are
deprecated starting with Numpy 1.21 (1173).
- The STRtree class now uses a pair of item, geom sequences internally instead
of a dict (1177).

1.8a2

------------------

Python version support:

Shapely 1.8 will support only Python versions >= 3.6.

New features:

- The STRtree nearest*() methods now take an optional argument that
specifies exclusion of the input geometry from results (1115).
- A GeometryTypeError has been added to shapely.errors and is consistently
raised instead of TypeError or ValueError as in version 1.7. For backwards
compatibility, the new exception will derive from TypeError and Value error
until version 2.0 (1099).
- The STRtree class constructor now takes an optional second argument, a
sequence of objects to be stored in the tree. If not provided, the sequence
indices of the geometries will be stored, as before (1112).
- The STRtree class has new query_geoms(), query_items(), nearest_geom(), and
nearest_item() methods (1112). The query() and nearest() methods remain as
aliases for query_geoms() and nearest_geom().

Bug fixes:

- We no longer attempt to load libc to get the free function on Linux, but get
it from the global symbol table.
- GEOS error messages printed when GEOS_getCoordSeq() is passed an empty
geometry are avoided by never passing an empty geometry (1134).
- Python's builtin super() is now used only as described in PEP 3135 (1109).
- Only load conda GEOS dll if it exists (on Windows) (1108).
- Add /opt/homebrew/lib to the list of directories to be searched for the GEOS
shared library.
- Added new library search path to assist app creation with cx_Freeze.

1.8a1

------------------

Links

• PyPI: https://pypi.org/project/shapely
• Changelog: https://data.safetycli.com/changelogs/shapely/

[pyup-bot]

Closing this in favor of #498