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Add option to write median depth to polished sequence #252

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edgardomortiz opened this issue Feb 5, 2021 · 1 comment
Open

Add option to write median depth to polished sequence #252

edgardomortiz opened this issue Feb 5, 2021 · 1 comment

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@edgardomortiz
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edgardomortiz commented Feb 5, 2021

Is your feature request related to a problem? Please describe.
No problem, just an improvement

Describe the solution you'd like
Write the median depth to the description of each FASTA polished sequence

Describe alternatives you've considered
None

Additional context
Since the coordinates of coverage are written to the description I thought it would be easy to implement to write the median depth as well

Thanks

Edgardo

@cjw85
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cjw85 commented Feb 6, 2021

Hi @edgardomortiz,

This is a nice suggestion and something we've thought of doing in the past. Unfortunately while relatively straight-forward this is something we don't have the free development time to implement currently.

If someone in the community wants to contribute the functionality we would gratefully accept a pull request.

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