Merge pull request #194 from mrc-ide/infections-metadata

fix new infections output scaling
mrc-ide · Dec 10, 2020 · a69325b · a69325b
2 parents 2db62dc + c928b7a
commit a69325b
Show file tree

Hide file tree

Showing 3 changed files with 7 additions and 3 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: naomi
 Title: Naomi Model for Subnational HIV Estimates
-Version: 2.1.9
+Version: 2.1.10
 Authors@R: 
     person(given = "Jeff",
            family = "Eaton",

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,7 @@
+# naomi 2.1.10
+
+* Fix new infections scaling. In plotting outputs number of new infections were being inadvertently scaled x100 (reported by Lesotho estimates team).
+
 # naomi 2.1.9
 
 * Increase eppasm dependency to 0.5.9.

diff --git a/inst/metadata/metadata.csv b/inst/metadata/metadata.csv
@@ -13,7 +13,7 @@ output,choropleth,art_current,mean,lower,upper,indicator,art_current,t_(ART_NUMB
 output,choropleth,population,mean,lower,upper,indicator,population,t_(POPULATION),1,1000,0
 output,choropleth,plhiv,mean,lower,upper,indicator,plhiv,t_(PLHIV),1,100,0
 output,choropleth,incidence,mean,lower,upper,indicator,incidence,t_(INCIDENCE),1000,,0
-output,choropleth,infections,mean,lower,upper,indicator,infections,t_(NEW_INFECTIONS),100,100,0
+output,choropleth,infections,mean,lower,upper,indicator,infections,t_(NEW_INFECTIONS),1,100,0
 output,choropleth,aware_plhiv_prop,mean,lower,upper,indicator,aware_plhiv_prop,t_(AWARE_PLHIV_PROP),1,,0.0%
 output,choropleth,unaware_plhiv_num,mean,lower,upper,indicator,unaware_plhiv_num,t_(UNAWARE_PLHIV_NUM),1,10,0
 output,choropleth,untreated_plhiv_num,mean,lower,upper,indicator,untreated_plhiv_num,t_(UNTREATED_PLHIV_NUM),1,10,0
@@ -33,7 +33,7 @@ output,barchart,art_current,mean,lower,upper,indicator,art_current,t_(ART_NUMBER
 output,barchart,population,mean,lower,upper,indicator,population,t_(POPULATION),1,1000,0
 output,barchart,plhiv,mean,lower,upper,indicator,plhiv,t_(PLHIV),1,100,0
 output,barchart,incidence,mean,lower,upper,indicator,incidence,t_(INCIDENCE),1000,,0
-output,barchart,infections,mean,lower,upper,indicator,infections,t_(NEW_INFECTIONS),100,100,0
+output,barchart,infections,mean,lower,upper,indicator,infections,t_(NEW_INFECTIONS),1,100,0
 output,barchart,aware_plhiv_prop,mean,lower,upper,indicator,aware_plhiv_prop,t_(AWARE_PLHIV_PROP),1,,0.0%
 output,barchart,unaware_plhiv_num,mean,lower,upper,indicator,unaware_plhiv_num,t_(UNAWARE_PLHIV_NUM),1,10,0
 output,barchart,untreated_plhiv_num,mean,lower,upper,indicator,untreated_plhiv_num,t_(UNTREATED_PLHIV_NUM),1,10,0