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Regenerate and fix spelling
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richfitz committed Jun 12, 2024
1 parent 2f79577 commit 867822f
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2 changes: 1 addition & 1 deletion R/parallel.R
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Expand Up @@ -19,7 +19,7 @@
##' `hipercow_resources`.
##'
##' For example, you could request 32 cores with `hipercow_resources`,
##' and then calll `hipercow_parallel` with `cores_per_process = 4`,
##' and then call `hipercow_parallel` with `cores_per_process = 4`,
##' and hipercow will create a local cluster with 8 processes, each
##' of which reporting `4` cores if that process calls
##' `hipercow_parallel_get_cores`.
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4 changes: 2 additions & 2 deletions R/task-purge.R
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Expand Up @@ -23,13 +23,13 @@
##'
##' # Consequences of deletion
##'
##' A nonexhaustive list:
##' A non-exhaustive list:
##'
##' * If you delete a task that is part of a [task_retry] chain, then
##' all tasks (both upstream and downstream in that chain) are
##' deleted
##' * Once we support task dependencies (mrc-4797), deleting tasks
##' will mark any unrun dependent task as impossible, or perhaps
##' will mark any not-yet-run dependent task as impossible, or perhaps
##' delete it too, or prevent you from deleting the task; we've not
##' decided yet
##' * You may have a bundle that references a task that you delete, in
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2 changes: 1 addition & 1 deletion R/zzz.R
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Expand Up @@ -3,7 +3,7 @@ cache <- new.env(parent = emptyenv())
##' The default set of environment variables used for all tasks.
##'
##' These are chosen to provide the best general experience. The default
##' variables may be overriden globally by setting the hipercow.default_envvars
##' variables may be overridden globally by setting the hipercow.default_envvars
##' option, or on a per-task and variable basis by assigning a different value
##' to the environment variable in question.
##'
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16 changes: 16 additions & 0 deletions inst/WORDLIST
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@@ -1,22 +1,33 @@
BitWarden
BuildQueue
CRAN's
CmdStan
DIDE
DIDE's
HPC
ICT
InfiniBand
JDK
OpenJDK
OpenMP
PBS
R's
RCS
RStudio
RTools
Rmd
Rtools
StackOverflow
SystemRoot
ZScaler
alloc
azul
backends
callr
chmod
cli
cli's
cmdstanr
codecov
com
conan
Expand All @@ -37,14 +48,19 @@ lockfile
macOS
mountname
mountpoint
mrc
pkgdepends
redis
redux
reestablished
renv
rfiglet
rlang
rrq
rstan
src
stan
standalone
std
supercedes
th
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2 changes: 1 addition & 1 deletion man/DEFAULT_ENVVARS.Rd

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2 changes: 1 addition & 1 deletion man/hipercow_envvars.Rd

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2 changes: 1 addition & 1 deletion man/hipercow_parallel.Rd

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4 changes: 2 additions & 2 deletions man/hipercow_purge.Rd

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2 changes: 1 addition & 1 deletion vignettes/administration.Rmd
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Expand Up @@ -112,7 +112,7 @@ echo Using RTOOLS43_HOME = %RTOOLS43_HOME%
echo Using JAVA_HOME = %JAVA_HOME%
```

These get copied to `C:\Windows` on each cluster node, using the HPC Cluster Manager. You simply select the nodes, right click, "Run Commmand", and look in the history for previous copy commands, to copy the batch files in to %SystemRoot% - hence they are always in the path on every node. You also need to edit the permissions to allow everyone to read the file, by running this on each cluster node:-
These get copied to `C:\Windows` on each cluster node, using the HPC Cluster Manager. You simply select the nodes, right click, "Run Command", and look in the history for previous copy commands, to copy the batch files in to %SystemRoot% - hence they are always in the path on every node. You also need to edit the permissions to allow everyone to read the file, by running this on each cluster node:-

```
cacls %SYSTEMROOT%\setr64_*.bat /e /p everyone:r
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2 changes: 1 addition & 1 deletion vignettes/details.Rmd
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Expand Up @@ -41,7 +41,7 @@ A number, being the maximum size object (in bytes) that we will save when creati

### `hipercow.default_envvars`

A `hipercow_envvars` object, with environment variables that will be added to every task created. Hipercow sets a few environment variables by default to improve the user experience. These variables can be overriden per-task by passing a `envvars` parameter when creating tasks, or globally by defining this option.
A `hipercow_envvars` object, with environment variables that will be added to every task created. Hipercow sets a few environment variables by default to improve the user experience. These variables can be overridden per-task by passing a `envvars` parameter when creating tasks, or globally by defining this option.

Environment variables for a task are computed by collecting (in increasing order of preference):

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