v2024-01-31 release

What's Changed

• Bugfix: OMIMPS labels missing from artefacts by @joeflack4 in #351
• Mondo Ingest release 2023-08-20 by @matentzn in #354
• Code to create merged_lex_exact_df by @hrshdhgd in #356
• Reran make mappings for gard omim and ordo by @hrshdhgd in #358
• Subprocess output by @joeflack4 in #362
• Makefile package management updates by @joeflack4 in #367
• New run by @hrshdhgd in #365
• Release 231107 by @matentzn in #370
• ICD10WHO prefix updates by @joeflack4 in #377
• Update prefixes.csv by @joeflack4 in #375
• SemanticSQL .db goal updates by @joeflack4 in #374
• Delete goal: components/%.db by @joeflack4 in #379
• Bugfix: %.db by @joeflack4 in #382
• Python requirements for Apple Silicon by @joeflack4 in #380
• RO/OMO import & .gitignore updates by @joeflack4 in #383
• Add dependency: bioregistry by @joeflack4 in #391
• Synchronization: SubClassOf by @joeflack4 in #363
• Add extended_prefix_map by @joeflack4 in #396
• Update: add-new-source.md by @joeflack4 in #401
• Lexmatch revamp by @matentzn in #397
• Reinstate sync pipeline by @matentzn in #403
• Delete: Goal for mondo.sssom.config.yml by @joeflack4 in #411
• ODK yaml formatting by @joeflack4 in #413
• Update omim_exclusions.tsv by @sabrinatoro in #409
• Update release files by @matentzn in #417

Full Changelog: v2023-07-25...v2024-01-31

v2023-07-25 release

TBD.

What's Changed

• release 2023-06-18 by @matentzn in #338
• Bugfix: Mapped deprecated by @joeflack4 in #337
• Update mondo.sssom.config.yml by @matentzn in #340
• Bug Fix #341 by @hrshdhgd in #342
• If no predicate_modifier column, add a blank one. by @hrshdhgd in #344
• PR #345 continued by @hrshdhgd in #347
• release 25.07.2023 by @matentzn in #348

Full Changelog: v2023-06-14...v2023-07-25

v2023-06-14 release

What's Changed

• Release 20230610 by @matentzn in #330
• Refactored code to automatically map new ontologies by @hrshdhgd in #332
• Release14062023 by @matentzn in #334

Full Changelog: v2023-06-11...v2023-06-14

2023-06-10 release

What's Changed

• Components w/ only unmapped mappables by @joeflack4 in #271
• release 2023-04-12 by @matentzn in #274
• Add 'recreate-unmapped-components' to build by @joeflack4 in #276
• omim comp by @matentzn in #277
• Bugfix: components/%-unmapped.owl by @joeflack4 in #282
• Add preprocess to turn omim xrefs to exact match by @matentzn in #284
• Run 17th April 2023 by @matentzn in #285
• Docs: slurp (and more) by @joeflack4 in #266
• mondo-ingest.Makefile standardization by @joeflack4 in #265
• Release 2023-04-19 by @matentzn in #289
• Sort SSSOM after parsing. by @hrshdhgd in #287
• Bugfix: OMIMPS children by @joeflack4 in #290
• Bugfix: Migrate: FileNotFoundError by @joeflack4 in #292
• Deletion of redundant SemSQL intermediaries by @joeflack4 in #293
• release 3 may by @matentzn in #296
• Fixed skos:exactMatch not appearing in lexical index and linking README.md file by @hrshdhgd in #300
• • Bugfix: by @matentzn in #301
• add-new-source.md updates by @joeflack4 in #307
• Bugfix: Bug KeyError: 'mondo_id' in migrate.py by @joeflack4 in #313
• Ran update_repo by @joeflack4 in #311
• Bugfix: Slurp: max() arg is an empty sequence by @joeflack4 in #315
• release19052023 by @matentzn in #317
• Various slurp / migrate updates by @joeflack4 in #316
• Slurp bugfixes by @joeflack4 in #320
• updated DO exclusion list by @sabrinatoro in #321
• Release01062023 by @matentzn in #322
• %-unmapped.owl components location changes by @joeflack4 in #323
• GARD ingest by @joeflack4 in #299
• ODK update, %-db removal by @joeflack4 in #325
• release 6 june 2023 by @matentzn in #326
• GARD mappings added by @hrshdhgd in #329

Full Changelog: v2023-04-05...v2023-06-11

v2023-04-05 release

What's Changed

• update release files by @matentzn in #269

Full Changelog: v2023-03-29...v2023-04-05

v2023-03-29 release

TBD.

What's Changed

• Mapping progress monitor: 'Tot deprecated unmapped' column by @joeflack4 in #239
• 29.03 release by @matentzn in #259

Full Changelog: v2023-03-28...v2023-03-29

v2023-03-28 release

TBD.

What's Changed

• Update: NCIT mapping status artefacts & docs by @joeflack4 in #235
• update DO exclusion list by @sabrinatoro in #236
• ORDO and OMIM mappings by @hrshdhgd in #208
• update release files by @matentzn in #245
• Makefile refactor by @joeflack4 in #238
• Update sssom mappings by @hrshdhgd in #243
• Bugfix: Mapping progress angle brackets by @joeflack4 in #250
• Mapping progress update (OMIM): following angle bracket bugfix by @joeflack4 in #253
• Rmoved abbreviations using ROBOT by @hrshdhgd in #254
• Bugfix: Slurp: terms with no parents by @joeflack4 in #252

Full Changelog: v2023-03-07...v2023-03-28

2023-03-07 Release

What's Changed

• New SPARQL queries to remove dbXrefs by @hrshdhgd in #135
• Unmapped files generated by @hrshdhgd in #170
• Added robot template fixes #173 by @hrshdhgd in #176
• Mapping progress report by @joeflack4 in #111
• Mapped deprecated terms by @joeflack4 in #108
• Added "inactive clinical entity" to the orphanet exclusion list by @sabrinatoro in #186
• Fix deprecate query for ORDO by @matentzn in #194
• Add deprecated clinical entities to component by @matentzn in #195
• Update ordo_exclusions.tsv by @nicolevasilevsky in #201
• OMIM exclusion updates by @joeflack4 in #203
• Exclusions: NCIT finding branch by @joeflack4 in #214
• Remove object_label from lexical pipeline by @matentzn in #215
• Artefact sorting by @joeflack4 in #217
• Bugfix: Slurp ID Persistence by @joeflack4 in #222
• Slurp run (all except NCIT) by @joeflack4 in #210
• Test docs action bugfix by @joeflack4 in #224
• Release 7 March by @matentzn in #232

New Contributors

• @nicolevasilevsky made their first contribution in #201

Full Changelog: v2023-01-21...v2023-03-07

January 2023 release

What's Changed

• Slurp: leading 0 padding on Mondo IDs by @joeflack4 in #97
• Bugfixes: (i) stale slurp prereqs, (ii) sorting of output tables by @joeflack4 in #100
• Updated ICD10CM mappings etc by @joeflack4 in #103
• updated ncit sparql and exclusion list by @sabrinatoro in #106
• update omim-exclusion.tsv by @sabrinatoro in #107
• Mappings-notebook by @hrshdhgd in #71
• updated omim exclusion list by @sabrinatoro in #118
• ORDO purl by @joeflack4 in #125
• Slurp: (i) bugfix: obsolete mondo terms, (ii) ORDO updates, (iii) bugfix: exclusions by @joeflack4 in #124
• OMIM exclusions & exclusion expansion scripting by @joeflack4 in #127
• Add synonymizer rules by @hrshdhgd in #113
• Fixes #130 by @hrshdhgd in #131
• added lexmatch in help by @hrshdhgd in #132

Full Changelog: v2022-10-08...v2023-01-21

October 2022 Release

Full Changelog: v2022-09-20...v2022-10-08