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ORDO docs updates #497

Merged
merged 6 commits into from
Apr 23, 2024
Merged

ORDO docs updates #497

merged 6 commits into from
Apr 23, 2024

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joeflack4
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@joeflack4 joeflack4 commented Apr 18, 2024

Overview

This PR updates ORDO docs:

Pre-merge checklist

Documentation

Was the documentation added/updated under docs/?

  • Yes
  • No, updates to the docs were not necessary after careful consideration

QC

Was the full pipeline run before submitting this PR using sh run.sh make build-mondo-ingest on this branch (after
docker pull obolibrary/odkfull:dev), and no errors occurred?

  • Yes
  • No, there are no functional (code-related) changes to the pipeline in the PR, so no re-run is necessary

New Packages

Were any new Python packages added?

Were any other non-Python packages added?

PR Review and Conversations Resolved

Has the PR been sufficiently reviewed by at least 1 team member of the Mondo Technical team and all threads resolved?

  • Yes

- Add: comments_about_this_source key to ordo.yml
- Update: ordo.md
@@ -71,3 +71,9 @@ comment: >
recorded in ORDO. This is why great care needs to be taking interpreting diesease 2 gene relationships during ingest!
base_prefix_map:
Orphanet: http://www.orpha.net/ORDO/Orphanet_
comments_about_this_source: >
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comments_about_this_source in ordo.yml

As decided in #481. The relevance of this will kick in moreso when that issue is completed.

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@joeflack4
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This PR is a low priority but just wanted to get it out of my personal notes and into the pipeline.

@joeflack4 joeflack4 added the documentation Improvements or additions to documentation label Apr 18, 2024
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joeflack4 and others added 5 commits April 22, 2024 17:40
Fixed some typos

Co-authored-by: Nico Matentzoglu <[email protected]>
Fixed some typos

Co-authored-by: Nico Matentzoglu <[email protected]>
Added clarifying language

Co-authored-by: Nico Matentzoglu <[email protected]>
Corrected typo and grammar

Co-authored-by: Nico Matentzoglu <[email protected]>
Added clarifying language

Co-authored-by: Nico Matentzoglu <[email protected]>
@joeflack4
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@matentzn Thanks for looking over the documentation and providing typo and grammar fixes, as well as adding some clarifying language. I have committed these suggestions!

@joeflack4 joeflack4 merged commit adc2015 into main Apr 23, 2024
@joeflack4 joeflack4 deleted the docs-ordo branch April 23, 2024 21:07
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2 participants