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ICD11 Ingest #434

Merged
merged 3 commits into from
Apr 12, 2024
Merged

ICD11 Ingest #434

merged 3 commits into from
Apr 12, 2024

Commits on Mar 29, 2024

  1. ICD11 config & docs

    - Rename: ICD11 -> ICD11Foundation
    - Rename prefix: icd11 -> icd11.foundation
    - Add prefixes: icd11.schema, icd11.z
    - Add: intensional exclusions TSV (currently empty)
    - Add: SPARQL query for selecting all diseases
    joeflack4 committed Mar 29, 2024
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  2. ICD11 config & docs

    - Update: mondo-ingest-odk.yaml: New entry for ICD11 in 'components'
    - Updates from running 'make update_repo':
      - modified: docs/odk-workflows/ManageDocumentation.md
      - modified: docs/odk-workflows/RepositoryFileStructure.md
      - modified: src/ontology/Makefile
      - modified: src/ontology/run.sh
      - new file: src/scripts/run-command.sh
      - modified: src/scripts/update_repo.sh
    - Add: metadata/icd11.yml
    - Update: prefixes.csv
    joeflack4 committed Mar 29, 2024
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Commits on Apr 12, 2024

  1. ICD11 Ingest

    - Update: mondo-ingest.Makefile
      - Add: $(COMPONENTSDIR)/icd11.owl
    - Add: config/icd11foundation-property-map.sssom.tsv
    - Update: ICD11 docs
    - Update: config/properties.txt
    - Update: config/context.json
    - Update: metadata/mondo.sssom.config.yml: added icd11.foundation to subject_prefixes
    - Update: lexmatch-sssom-compare.py: entry for icd11
    - Update: add-new-source.md: Instructions for additional configuration necessities.
    
    General
    - Bugfix: Slurp files were sometimes getting removed because they were considered intermediates and not .PRECIOUS.
    - Bugfix: reports/*_exclusion_reasons.robot.template.tsv files were getting removed by the build for same reason as above.
    joeflack4 committed Apr 12, 2024
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