Merge pull request #486 from monarch-initiative/issue-140

Include ICD11 mappings
monarch-initiative · Apr 4, 2024 · 3c353fb · 3c353fb
2 parents 8bcce8e + dbdc652
commit 3c353fb
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Showing 7 changed files with 2,630 additions and 2,512 deletions.
diff --git a/src/mappings/doid.sssom.tsv b/src/mappings/doid.sssom.tsv
diff --git a/src/mappings/gard.sssom.tsv b/src/mappings/gard.sssom.tsv
@@ -9,7 +9,7 @@
 #   skos: http://www.w3.org/2004/02/skos/core#
 #   sssom: https://w3id.org/sssom/
 # license: https://w3id.org/sssom/license/unspecified
-# mapping_set_id: https://w3id.org/sssom/mappings/fba76c0f-e243-4b76-84be-13031a56bcfa
+# mapping_set_id: https://w3id.org/sssom/mappings/a2d27ac8-e35c-4370-a09d-803978eaa02f
 subject_id	subject_label	predicate_id	object_id	mapping_justification
 obo:GARD_1	GRACILE syndrome	skos:exactMatch	Orphanet:53693	semapv:UnspecifiedMatching
 obo:GARD_1	GRACILE syndrome	skos:narrowMatch	OMIM:603358	semapv:UnspecifiedMatching

diff --git a/src/mappings/icd10cm.sssom.tsv b/src/mappings/icd10cm.sssom.tsv
@@ -6,6 +6,6 @@
 #   skos: http://www.w3.org/2004/02/skos/core#
 #   sssom: https://w3id.org/sssom/
 # license: https://w3id.org/sssom/license/unspecified
-# mapping_set_id: https://w3id.org/sssom/mappings/505bfd44-9435-45eb-be59-3c19aa83d3e3
+# mapping_set_id: https://w3id.org/sssom/mappings/c15beb32-c0a5-4a9f-bff3-337c52503878
 
 
diff --git a/src/mappings/icd10who.sssom.tsv b/src/mappings/icd10who.sssom.tsv
@@ -6,6 +6,6 @@
 #   skos: http://www.w3.org/2004/02/skos/core#
 #   sssom: https://w3id.org/sssom/
 # license: https://w3id.org/sssom/license/unspecified
-# mapping_set_id: https://w3id.org/sssom/mappings/69a61798-1eb3-45d6-a3fa-bcd03dc5cf25
+# mapping_set_id: https://w3id.org/sssom/mappings/8e08c2db-8891-4a5e-990e-1a50b1b83041
 
 
diff --git a/src/mappings/ncit.sssom.tsv b/src/mappings/ncit.sssom.tsv
@@ -9,7 +9,7 @@
 #   skos: http://www.w3.org/2004/02/skos/core#
 #   sssom: https://w3id.org/sssom/
 # license: https://w3id.org/sssom/license/unspecified
-# mapping_set_id: https://w3id.org/sssom/mappings/9367551c-034c-40d2-881a-2a73c73020a2
+# mapping_set_id: https://w3id.org/sssom/mappings/644cb230-28fb-4860-b973-21bd6950b861
 subject_id	subject_label	predicate_id	object_id	mapping_justification
 NCIT:C103222	Popliteal Fossa	oboInOwl:hasDbXref	UBERON:0013069	semapv:UnspecifiedMatching
 NCIT:C103384	Common Iliac Lymph Node	oboInOwl:hasDbXref	UBERON:0015878	semapv:UnspecifiedMatching

diff --git a/src/mappings/omim.sssom.tsv b/src/mappings/omim.sssom.tsv
diff --git a/src/sparql/rm_xref_by_prefix.ru b/src/sparql/rm_xref_by_prefix.ru
@@ -16,5 +16,5 @@ WHERE {
     oboInOwl:hasDbXref ?xref ;
     ?p1 ?o2 .
   }
-  FILTER( STRSTARTS(str(?xref), "UMLS_ICD9CM_2005_AUI:") || STRSTARTS(str(?xref), "ICD11:") || STRSTARTS(str(?xref), "SNOMEDCT_US_") || STRSTARTS(str(?xref), "IMDRF:") || STRSTARTS(str(?xref), "url:") )
+  FILTER( STRSTARTS(str(?xref), "UMLS_ICD9CM_2005_AUI:") || STRSTARTS(str(?xref), "SNOMEDCT_US_") || STRSTARTS(str(?xref), "IMDRF:") || STRSTARTS(str(?xref), "url:") )
 }