MOM6: +Add particle code option to advect with uhtr (#492)

- NOAA-GFDL/MOM6@38aeccd85 +Add particle code option to advect with uhtr (#492)
- NOAA-GFDL/MOM6@95d6e9360 (+*) Fix bugs in tracer index in tracer reservoirs (#480)
- NOAA-GFDL/MOM6@bd4c87ce5 *Use thickness_to_dz in dumbbell_initialize_sponges
- NOAA-GFDL/MOM6@2ac48a63d SSA convergence based on change of norm (NOAA-GFDL#469)
- NOAA-GFDL/MOM6@41609c2a2 Modify quadrature used for ice shelf viscosity (NOAA-GFDL#468)
- NOAA-GFDL/MOM6@23345f0d8 *Fix non-Boussinesq Flather BT_OBC%dZ_v bug
MOM6: Codecov token for unit test upload
- NOAA-GFDL/MOM6@365033989 New treatment of ice shelf boundaries (NOAA-GFDL#467)
- NOAA-GFDL/MOM6@e2deaecba *Patches for nonBous_OBCs to prevent blocking
- NOAA-GFDL/MOM6@06bc0018c +Add segment%dZtot
- NOAA-GFDL/MOM6@54b46f621 +Non-Boussinesq Flather open boundary conditions
- NOAA-GFDL/MOM6@55c948ad7 +Add find_col_avg_SpV
- NOAA-GFDL/MOM6@de385624b Read OBC SSH data in Z units
- NOAA-GFDL/MOM6@7cef1e450 +Rename OBC sea surface height variables
MOM6: Codecov upload uses Github Actions token

coupled_AM2_LM3_SIS2/AM2_SIS2_MOM6i_1deg/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

coupled_AM2_LM3_SIS2/Concurrent_ice_1deg/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

coupled_AM2_LM3_SIS2/Intersperse_ice_1deg/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ice_ocean_SIS2/Baltic/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ice_ocean_SIS2/Baltic_ALE_z_offline_tracers/MOM_parameter_doc.all

@@ -172,6 +172,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ice_ocean_SIS2/Baltic_OM4_025/MOM_parameter_doc.all

@@ -172,6 +172,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ice_ocean_SIS2/Baltic_OM4_05/MOM_parameter_doc.all

@@ -172,6 +172,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ice_ocean_SIS2/OM4_025/MOM_parameter_doc.all

@@ -172,6 +172,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ice_ocean_SIS2/OM4_05/MOM_parameter_doc.all

@@ -172,6 +172,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ice_ocean_SIS2/OM_1deg/MOM_parameter_doc.all

@@ -172,6 +172,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ice_ocean_SIS2/SIS2/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ice_ocean_SIS2/SIS2_bergs_cgrid/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ice_ocean_SIS2/SIS2_cgrid/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/CVmix_SCM_tests/cooling_only/BML/MOM_parameter_doc.all

@@ -141,6 +141,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/CVmix_SCM_tests/cooling_only/EPBL/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/CVmix_SCM_tests/cooling_only/KPP/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/CVmix_SCM_tests/mech_only/BML/MOM_parameter_doc.all

@@ -141,6 +141,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/CVmix_SCM_tests/mech_only/EPBL/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/CVmix_SCM_tests/mech_only/KPP/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/CVmix_SCM_tests/skin_warming_wind/BML/MOM_parameter_doc.all

@@ -141,6 +141,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/CVmix_SCM_tests/skin_warming_wind/EPBL/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/CVmix_SCM_tests/skin_warming_wind/KPP/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/CVmix_SCM_tests/wind_only/BML/MOM_parameter_doc.all

@@ -141,6 +141,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/CVmix_SCM_tests/wind_only/EPBL/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/CVmix_SCM_tests/wind_only/KPP/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/DOME/MOM_parameter_doc.all

@@ -125,6 +125,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/Phillips_2layer/MOM_parameter_doc.all

@@ -125,6 +125,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the

ocean_only/SCM_idealized_hurricane/MOM_parameter_doc.all

@@ -149,6 +149,8 @@ ICE_SHELF = False               !   [Boolean] default = False
                                 ! If true, enables the ice shelf model.
 USE_PARTICLES = False           !   [Boolean] default = False
                                 ! If true, use the particles package.
+USE_UH_PARTICLES = False        !   [Boolean] default = False
+                                ! If true, use the uh velocity in the particles package.
 ENSEMBLE_OCEAN = False          !   [Boolean] default = False
                                 ! If False, The model is being run in serial mode as a single realization. If
                                 ! True, The current model realization is part of a larger ensemble and at the