update docker-ci workflow

.github/workflows/docker-ci.yml

@@ -1,35 +1,63 @@
-# This workflow runs inside a github actions docker container. The workflow
-# itself runs another docker container for hosting the dev server which is
-# configured with some specific configurations (container network, port...)
-# so that it works properly within the docker-in-docker setup. Keep in mind
-# that github actions mounts the docker daemon path when running the
-# workflow container.
-#
-# ******** NOTE ********
-# MLCubes use docker behind the scenes by default. We don't have direct
-# control over how docker commands are called by the MLCube, so care
-# should be taken when we start using new container configurations
-# inside the mlcube (e.g. networking)
-
 name: Integration local docker workflow
 
-on: pull_request
+on: pull_request_target
 
 jobs:
+  authorize:
+    environment:
+      'testing-external-code'
+    runs-on: ubuntu-latest
+    steps:
+      - run: true
   setup:
+    needs: authorize
     name: local-docker-deploy
     runs-on: ubuntu-latest
-    container: 
-      image: mlcommons/medperf-tests-container:latest
-      options: --privileged --name medperf-tests
-      volumes:
-        - /tmp:/tmp # To share the directory where the test dataset is downloaded
-        - /github/home/.medperf:/github/home/.medperf # To share medperf storage
     env:
       IMAGE_NAME: medperf-api:test
+      MOCK_USERS_PASSWORD: ${{ secrets.MEDPERF_MOCK_USERS_PASSWORD }}
     steps:
     - name: Checkout repository
       uses: actions/checkout@v2
+      with:
+        ref: ${{ github.event.pull_request.head.sha }}
+
+    - name: Set up Python 3.9
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.9'
+
+    - name: Setup Chrome
+      run: |
+        sudo apt-get install -y wget
+        wget -O chrome.deb https://dl.google.com/linux/chrome/deb/pool/main/g/google-chrome-stable/google-chrome-stable_114.0.5735.198-1_amd64.deb
+        sudo dpkg -i chrome.deb
+        rm chrome.deb
+
+    - name: Install Singularity
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y build-essential libssl-dev uuid-dev libgpgme11-dev \
+            squashfs-tools libseccomp-dev wget pkg-config git cryptsetup debootstrap libglib2.0-dev
+        wget https://go.dev/dl/go1.17.11.linux-amd64.tar.gz
+        sudo tar --directory=/usr/local -xzvf go1.17.11.linux-amd64.tar.gz
+        export PATH=/usr/local/go/bin:$PATH
+        wget https://github.com/sylabs/singularity/releases/download/v3.10.0/singularity-ce-3.10.0.tar.gz
+        tar -xzvf singularity-ce-3.10.0.tar.gz
+        cd singularity-ce-3.10.0
+        ./mconfig
+        cd builddir
+        make
+        sudo make install
+
+    - name: Install dependencies
+      working-directory: .
+      run: |
+        python -m pip install --upgrade pip
+        pip install -e cli/
+        pip install -r cli/test-requirements.txt
+        pip install -r server/requirements.txt
+        pip install -r server/test-requirements.txt
 
     - name: Set server environment vars
       working-directory: ./server
@@ -45,23 +73,16 @@ jobs:
 
     - name: Run server in background
       working-directory: ./server
-      run: PORT=8000 && docker run --name medperf-api -d --network container:medperf-tests -e PORT=${PORT} -e SSL_FLAGS="--certfile=cert.crt --keyfile=cert.key" ${{ env.IMAGE_NAME }}
+      run: PORT=8080 && docker run --name medperf_api -d -p 8000:${PORT} -e PORT=${PORT} -e SSL_FLAGS="--certfile=cert.crt --keyfile=cert.key" ${{ env.IMAGE_NAME }}
 
-    - name: Run integration tests
+    - name: Run server integration tests
       working-directory: ./server
-      run: pip install -r test-requirements.txt --user && python seed.py --cert cert.crt
-
-    - name: Install dependencies
-      working-directory: .
-      run: |
-        python -m pip install --upgrade pip
-        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
-        if [ -f cli/requirements.txt ]; then pip install -e cli; fi
+      run: docker exec -e MOCK_USERS_PASSWORD medperf_api sh -c "pip install -r test-requirements.txt && python seed.py --server https://127.0.0.1:8080 --cert cert.crt"
 
     - name: Run chestxray demo
       working-directory: .
       run: sh cli/cli_chestxray_tutorial_test.sh -f
 
     - name: Run client integration tests
       working-directory: .
-      run: sh cli/cli_tests.sh
+      run: sh cli/cli_tests.sh -f