Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Sync #903

Merged
merged 26 commits into from
Jul 24, 2024
Merged

Sync #903

merged 26 commits into from
Jul 24, 2024

Commits on May 8, 2024

  1. fix train metrics errors 

    1. return output of whole batch, not just one item
2. make ground truth & predictions array to take into account `q_samples_per_volume` (the whole dataset size during 1 epoch is equal to len(data) * q_samples_per_volume; so if dataset df contains 100 records and q_samples_per_volume = 10 (by default) and batch size is 4, there would be 250 batches by 4 elements
3. make ground truth take into account that train_dataloader is shuffled. So now ground truth is sorted in the same order as predictions and as train_dataloader.
    @VukW
    VukW committed May 8, 2024
    Configuration menu
    Copy the full SHA
    d90d19e View commit details
    Browse the repository at this point in the history

Commits on May 14, 2024

  1. Output_metrics is filled only for the last weighted avg_type

    @VukW
    VukW committed May 14, 2024
    Configuration menu
    Copy the full SHA
    ada9577 View commit details
    Browse the repository at this point in the history

  2. Refactored logger 

    To ensure values in csv are always written in the same order as header
    @VukW
    VukW committed May 14, 2024
    Configuration menu
    Copy the full SHA
    73174c7 View commit details
    Browse the repository at this point in the history

  3. general refactoring & typing

    @VukW
    VukW committed May 14, 2024
    Configuration menu
    Copy the full SHA
    7303736 View commit details
    Browse the repository at this point in the history

  4. Fix after changing step output shape

    @VukW
    VukW committed May 14, 2024
    Configuration menu
    Copy the full SHA
    36bbfa9 View commit details
    Browse the repository at this point in the history

Commits on May 21, 2024

  1. dynamic lists instead of fixed size for handling dynamic batch_size

    @VukW
    VukW committed May 21, 2024
    Configuration menu
    Copy the full SHA
    62ffb14 View commit details
    Browse the repository at this point in the history

  2. Fix for segmentation

    @VukW
    VukW committed May 21, 2024
    Configuration menu
    Copy the full SHA
    3987439 View commit details
    Browse the repository at this point in the history

  3. a crutch for deep_* and sdnet architectures (that return list)

    @VukW
    VukW committed May 21, 2024
    Configuration menu
    Copy the full SHA
    26b33a9 View commit details
    Browse the repository at this point in the history

Commits on May 22, 2024

  1. Merge remote-tracking branch 'origin/VukW-patch-1' into fix_train_met… 

    …rics
    @VukW
    VukW committed May 22, 2024
    Configuration menu
    Copy the full SHA
    887def5 View commit details
    Browse the repository at this point in the history

  2. turning training dataset shuffle on 

    was turned off as workaround at #870
    @VukW
    VukW committed May 22, 2024
    Configuration menu
    Copy the full SHA
    71273ce View commit details
    Browse the repository at this point in the history

Commits on May 23, 2024

  1. Test fix for the case when both label and value_to_pred exist 

    fixes test_train_inference_classification_histology_large_2d (35)
    @VukW
    VukW committed May 23, 2024
    Configuration menu
    Copy the full SHA
    d30cf20 View commit details
    Browse the repository at this point in the history

  2. bugfix when label is not present

    @VukW
    VukW committed May 23, 2024
    Configuration menu
    Copy the full SHA
    92c4387 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'master' into fix_train_metrics

    @VukW
    VukW authored May 23, 2024
    Configuration menu
    Copy the full SHA
    8409f7a View commit details
    Browse the repository at this point in the history

Commits on Jun 4, 2024

  1. Merge branch 'master' into fix_train_metrics

    @sarthakpati
    sarthakpati authored Jun 4, 2024
    Configuration menu
    Copy the full SHA
    ac2a442 View commit details
    Browse the repository at this point in the history

Commits on Jun 6, 2024

  1. Do not assert metric shape; lets take a first evaluated instead 

    (for one of classes per-label metrics are not counted thus metric shape may differ)
    @VukW
    VukW committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    d0d25fb View commit details
    Browse the repository at this point in the history

  2. Blacked

    @VukW
    VukW committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    ca8a904 View commit details
    Browse the repository at this point in the history

Commits on Jul 9, 2024

  1. correct forward operations order

    @hongbozheng
    hongbozheng authored Jul 9, 2024
    Configuration menu
    Copy the full SHA
    53eb145 View commit details
    Browse the repository at this point in the history

  2. fixed pip version for CI tests

    @sarthakpati
    sarthakpati authored Jul 9, 2024
    Configuration menu
    Copy the full SHA
    346e7c2 View commit details
    Browse the repository at this point in the history

  3. removed additional space

    @sarthakpati
    sarthakpati authored Jul 9, 2024
    Configuration menu
    Copy the full SHA
    df86271 View commit details
    Browse the repository at this point in the history

  4. Merge pull request #898 from mlcommons/master_pip-fix 

    Fixed pip version for CI tests
    @scap3yvt
    scap3yvt authored Jul 9, 2024
    Configuration menu
    Copy the full SHA
    4f9dfd7 View commit details
    Browse the repository at this point in the history

  5. Merge branch 'master' into patch-1

    @sarthakpati
    sarthakpati authored Jul 9, 2024
    Configuration menu
    Copy the full SHA
    b604142 View commit details
    Browse the repository at this point in the history

Commits on Jul 10, 2024

  1. Corrected forward operations order and norm layer parameter

    @hongbozheng
    hongbozheng authored Jul 10, 2024
    Configuration menu
    Copy the full SHA
    2cb0ac0 View commit details
    Browse the repository at this point in the history

Commits on Jul 13, 2024

  1. Merge pull request #897 from hongbozheng/patch-1 

    Corrected forward operations order
    @Geeks-Sid
    Geeks-Sid authored Jul 13, 2024
    Configuration menu
    Copy the full SHA
    00c65bd View commit details
    Browse the repository at this point in the history

Commits on Jul 18, 2024

  1. Error correction in validation and testing loops 

    - the same metric error was occuring in the loops in forward_pass.py -
  now it is fixed
- entire epoch completes successfully
Implemented by Szymon Mazurek [email protected]
    @VukW
    VukW committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    6b22745 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' into fix_train_metrics

    @VukW
    VukW committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    0829662 View commit details
    Browse the repository at this point in the history

Commits on Jul 19, 2024

  1. Merge pull request #868 from VukW/fix_train_metrics 

    Fix train metrics
    @sarthakpati
    sarthakpati authored Jul 19, 2024
    Configuration menu
    Copy the full SHA
    8b9fb47 View commit details
    Browse the repository at this point in the history