pair repo with fixes to algorithms

mlcommons · Jul 25, 2023 · 7a367e9 · 7a367e9
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diff --git a/GANDLF/__init__.py b/GANDLF/__init__.py
diff --git a/GANDLF/README.md → GANDLF_modules/README.md b/GANDLF/README.md → GANDLF_modules/README.md
diff --git a/GANDLF/data/patch_miner/__init__.py → GANDLF_modules/__init__.py b/GANDLF/data/patch_miner/__init__.py → GANDLF_modules/__init__.py
diff --git a/GANDLF/anonymize/__init__.py → GANDLF_modules/anonymize/__init__.py b/GANDLF/anonymize/__init__.py → GANDLF_modules/anonymize/__init__.py
diff --git a/GANDLF/anonymize/convert_to_nifti.py → GANDLF_modules/anonymize/convert_to_nifti.py b/GANDLF/anonymize/convert_to_nifti.py → GANDLF_modules/anonymize/convert_to_nifti.py
diff --git a/GANDLF/cli/__init__.py → GANDLF_modules/cli/__init__.py b/GANDLF/cli/__init__.py → GANDLF_modules/cli/__init__.py
diff --git a/GANDLF/cli/config_generator.py → GANDLF_modules/cli/config_generator.py b/GANDLF/cli/config_generator.py → GANDLF_modules/cli/config_generator.py
diff --git a/GANDLF/cli/deploy.py → GANDLF_modules/cli/deploy.py b/GANDLF/cli/deploy.py → GANDLF_modules/cli/deploy.py
diff --git a/GANDLF/cli/generate_metrics.py → GANDLF_modules/cli/generate_metrics.py b/GANDLF/cli/generate_metrics.py → GANDLF_modules/cli/generate_metrics.py
diff --git a/GANDLF/cli/main_run.py → GANDLF_modules/cli/main_run.py b/GANDLF/cli/main_run.py → GANDLF_modules/cli/main_run.py
diff --git a/GANDLF/cli/patch_extraction.py → GANDLF_modules/cli/patch_extraction.py b/GANDLF/cli/patch_extraction.py → GANDLF_modules/cli/patch_extraction.py
diff --git a/...F/cli/post_training_model_optimization.py → ...s/cli/post_training_model_optimization.py b/...F/cli/post_training_model_optimization.py → ...s/cli/post_training_model_optimization.py
diff --git a/GANDLF/cli/preprocess_and_save.py → GANDLF_modules/cli/preprocess_and_save.py b/GANDLF/cli/preprocess_and_save.py → GANDLF_modules/cli/preprocess_and_save.py
diff --git a/GANDLF/cli/recover_config.py → GANDLF_modules/cli/recover_config.py b/GANDLF/cli/recover_config.py → GANDLF_modules/cli/recover_config.py
diff --git a/GANDLF/compute/__init__.py → GANDLF_modules/compute/__init__.py b/GANDLF/compute/__init__.py → GANDLF_modules/compute/__init__.py
diff --git a/GANDLF/compute/forward_pass.py → GANDLF_modules/compute/forward_pass.py b/GANDLF/compute/forward_pass.py → GANDLF_modules/compute/forward_pass.py
diff --git a/GANDLF/compute/generic.py → GANDLF_modules/compute/generic.py b/GANDLF/compute/generic.py → GANDLF_modules/compute/generic.py
diff --git a/GANDLF/compute/inference_loop.py → GANDLF_modules/compute/inference_loop.py b/GANDLF/compute/inference_loop.py → GANDLF_modules/compute/inference_loop.py
diff --git a/GANDLF/compute/loss_and_metric.py → GANDLF_modules/compute/loss_and_metric.py b/GANDLF/compute/loss_and_metric.py → GANDLF_modules/compute/loss_and_metric.py
diff --git a/GANDLF/compute/step.py → GANDLF_modules/compute/step.py b/GANDLF/compute/step.py → GANDLF_modules/compute/step.py
diff --git a/GANDLF/compute/training_loop.py → GANDLF_modules/compute/training_loop.py b/GANDLF/compute/training_loop.py → GANDLF_modules/compute/training_loop.py
diff --git a/GANDLF/data/ImagesFromDataFrame.py → GANDLF_modules/data/ImagesFromDataFrame.py b/GANDLF/data/ImagesFromDataFrame.py → GANDLF_modules/data/ImagesFromDataFrame.py
diff --git a/GANDLF/data/__init__.py → GANDLF_modules/data/__init__.py b/GANDLF/data/__init__.py → GANDLF_modules/data/__init__.py
diff --git a/GANDLF/data/augmentation/README.md → GANDLF_modules/data/augmentation/README.md b/GANDLF/data/augmentation/README.md → GANDLF_modules/data/augmentation/README.md
diff --git a/GANDLF/data/augmentation/__init__.py → GANDLF_modules/data/augmentation/__init__.py b/GANDLF/data/augmentation/__init__.py → GANDLF_modules/data/augmentation/__init__.py
diff --git a/GANDLF/data/augmentation/blur_enhanced.py → ...odules/data/augmentation/blur_enhanced.py b/GANDLF/data/augmentation/blur_enhanced.py → ...odules/data/augmentation/blur_enhanced.py
diff --git a/GANDLF/data/augmentation/hed_augs.py → GANDLF_modules/data/augmentation/hed_augs.py b/GANDLF/data/augmentation/hed_augs.py → GANDLF_modules/data/augmentation/hed_augs.py
diff --git a/GANDLF/data/augmentation/noise_enhanced.py → ...dules/data/augmentation/noise_enhanced.py b/GANDLF/data/augmentation/noise_enhanced.py → ...dules/data/augmentation/noise_enhanced.py
diff --git a/GANDLF/data/augmentation/rgb_augs.py → GANDLF_modules/data/augmentation/rgb_augs.py b/GANDLF/data/augmentation/rgb_augs.py → GANDLF_modules/data/augmentation/rgb_augs.py
diff --git a/GANDLF/data/augmentation/rotations.py → ...LF_modules/data/augmentation/rotations.py b/GANDLF/data/augmentation/rotations.py → ...LF_modules/data/augmentation/rotations.py
diff --git a/GANDLF/data/augmentation/wrap_torchio.py → ...modules/data/augmentation/wrap_torchio.py b/GANDLF/data/augmentation/wrap_torchio.py → ...modules/data/augmentation/wrap_torchio.py
diff --git a/...LF/data/inference_dataloader_histopath.py → ...es/data/inference_dataloader_histopath.py b/...LF/data/inference_dataloader_histopath.py → ...es/data/inference_dataloader_histopath.py
diff --git a/GANDLF/data/patch_miner/README.md → GANDLF_modules/data/patch_miner/README.md b/GANDLF/data/patch_miner/README.md → GANDLF_modules/data/patch_miner/README.md
diff --git a/GANDLF_modules/data/patch_miner/__init__.py b/GANDLF_modules/data/patch_miner/__init__.py
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diff --git a/GANDLF/data/patch_miner/opm/__init__.py → ..._modules/data/patch_miner/opm/__init__.py b/GANDLF/data/patch_miner/opm/__init__.py → ..._modules/data/patch_miner/opm/__init__.py
diff --git a/GANDLF/data/patch_miner/opm/config.yml → ...F_modules/data/patch_miner/opm/config.yml b/GANDLF/data/patch_miner/opm/config.yml → ...F_modules/data/patch_miner/opm/config.yml
diff --git a/GANDLF/data/patch_miner/opm/patch.py → GANDLF_modules/data/patch_miner/opm/patch.py b/GANDLF/data/patch_miner/opm/patch.py → GANDLF_modules/data/patch_miner/opm/patch.py
diff --git a/GANDLF/data/patch_miner/opm/patch_manager.py → ...les/data/patch_miner/opm/patch_manager.py b/GANDLF/data/patch_miner/opm/patch_manager.py → ...les/data/patch_miner/opm/patch_manager.py
diff --git a/GANDLF/data/patch_miner/opm/utils.py → GANDLF_modules/data/patch_miner/opm/utils.py b/GANDLF/data/patch_miner/opm/utils.py → GANDLF_modules/data/patch_miner/opm/utils.py
diff --git a/GANDLF/data/post_process/README.md → GANDLF_modules/data/post_process/README.md b/GANDLF/data/post_process/README.md → GANDLF_modules/data/post_process/README.md
diff --git a/GANDLF/data/post_process/__init__.py → GANDLF_modules/data/post_process/__init__.py b/GANDLF/data/post_process/__init__.py → GANDLF_modules/data/post_process/__init__.py
diff --git a/GANDLF/data/post_process/morphology.py → ...F_modules/data/post_process/morphology.py b/GANDLF/data/post_process/morphology.py → ...F_modules/data/post_process/morphology.py
diff --git a/GANDLF/data/post_process/tensor.py → GANDLF_modules/data/post_process/tensor.py b/GANDLF/data/post_process/tensor.py → GANDLF_modules/data/post_process/tensor.py
diff --git a/GANDLF/data/preprocessing/README.md → GANDLF_modules/data/preprocessing/README.md b/GANDLF/data/preprocessing/README.md → GANDLF_modules/data/preprocessing/README.md
diff --git a/GANDLF/data/preprocessing/__init__.py → ...LF_modules/data/preprocessing/__init__.py b/GANDLF/data/preprocessing/__init__.py → ...LF_modules/data/preprocessing/__init__.py
diff --git a/...LF/data/preprocessing/crop_zero_planes.py → ...es/data/preprocessing/crop_zero_planes.py b/...LF/data/preprocessing/crop_zero_planes.py → ...es/data/preprocessing/crop_zero_planes.py
diff --git a/.../data/preprocessing/non_zero_normalize.py → .../data/preprocessing/non_zero_normalize.py b/.../data/preprocessing/non_zero_normalize.py → .../data/preprocessing/non_zero_normalize.py
diff --git a/GANDLF/data/preprocessing/normalize_rgb.py → ...dules/data/preprocessing/normalize_rgb.py b/GANDLF/data/preprocessing/normalize_rgb.py → ...dules/data/preprocessing/normalize_rgb.py
diff --git a/...LF/data/preprocessing/resample_minimum.py → ...es/data/preprocessing/resample_minimum.py b/...LF/data/preprocessing/resample_minimum.py → ...es/data/preprocessing/resample_minimum.py
diff --git a/GANDLF/data/preprocessing/rgb_conversion.py → ...ules/data/preprocessing/rgb_conversion.py b/GANDLF/data/preprocessing/rgb_conversion.py → ...ules/data/preprocessing/rgb_conversion.py
diff --git a/...preprocessing/template_matching/README.md → ...preprocessing/template_matching/README.md b/...preprocessing/template_matching/README.md → ...preprocessing/template_matching/README.md
diff --git a/...eprocessing/template_matching/__init__.py → ...eprocessing/template_matching/__init__.py b/...eprocessing/template_matching/__init__.py → ...eprocessing/template_matching/__init__.py
diff --git a/...a/preprocessing/template_matching/base.py → ...a/preprocessing/template_matching/base.py b/...a/preprocessing/template_matching/base.py → ...a/preprocessing/template_matching/base.py
diff --git a/...g/template_matching/histogram_matching.py → ...g/template_matching/histogram_matching.py b/...g/template_matching/histogram_matching.py → ...g/template_matching/histogram_matching.py
diff --git a/...ing/template_matching/stain_extractors.py → ...ing/template_matching/stain_extractors.py b/...ing/template_matching/stain_extractors.py → ...ing/template_matching/stain_extractors.py
diff --git a/...ing/template_matching/stain_normalizer.py → ...ing/template_matching/stain_normalizer.py b/...ing/template_matching/stain_normalizer.py → ...ing/template_matching/stain_normalizer.py
diff --git a/.../preprocessing/template_matching/utils.py → .../preprocessing/template_matching/utils.py b/.../preprocessing/template_matching/utils.py → .../preprocessing/template_matching/utils.py
diff --git a/.../data/preprocessing/threshold_and_clip.py → .../data/preprocessing/threshold_and_clip.py b/.../data/preprocessing/threshold_and_clip.py → .../data/preprocessing/threshold_and_clip.py
diff --git a/GANDLF/grad_clipping/__init__.py → GANDLF_modules/grad_clipping/__init__.py b/GANDLF/grad_clipping/__init__.py → GANDLF_modules/grad_clipping/__init__.py
diff --git a/...ad_clipping/adaptive_gradient_clipping.py → ...ad_clipping/adaptive_gradient_clipping.py b/...ad_clipping/adaptive_gradient_clipping.py → ...ad_clipping/adaptive_gradient_clipping.py
diff --git a/GANDLF/grad_clipping/clip_gradients.py → ...F_modules/grad_clipping/clip_gradients.py b/GANDLF/grad_clipping/clip_gradients.py → ...F_modules/grad_clipping/clip_gradients.py
diff --git a/GANDLF/grad_clipping/grad_scaler.py → GANDLF_modules/grad_clipping/grad_scaler.py b/GANDLF/grad_clipping/grad_scaler.py → GANDLF_modules/grad_clipping/grad_scaler.py
diff --git a/GANDLF/inference_manager.py → GANDLF_modules/inference_manager.py b/GANDLF/inference_manager.py → GANDLF_modules/inference_manager.py
diff --git a/GANDLF/logger.py → GANDLF_modules/logger.py b/GANDLF/logger.py → GANDLF_modules/logger.py
diff --git a/GANDLF/losses/README.md → GANDLF_modules/losses/README.md b/GANDLF/losses/README.md → GANDLF_modules/losses/README.md
diff --git a/GANDLF/losses/__init__.py → GANDLF_modules/losses/__init__.py b/GANDLF/losses/__init__.py → GANDLF_modules/losses/__init__.py
diff --git a/GANDLF/losses/hybrid.py → GANDLF_modules/losses/hybrid.py b/GANDLF/losses/hybrid.py → GANDLF_modules/losses/hybrid.py
diff --git a/GANDLF/losses/regression.py → GANDLF_modules/losses/regression.py b/GANDLF/losses/regression.py → GANDLF_modules/losses/regression.py
diff --git a/GANDLF/losses/segmentation.py → GANDLF_modules/losses/segmentation.py b/GANDLF/losses/segmentation.py → GANDLF_modules/losses/segmentation.py
diff --git a/GANDLF/metrics/README.md → GANDLF_modules/metrics/README.md b/GANDLF/metrics/README.md → GANDLF_modules/metrics/README.md
diff --git a/GANDLF/metrics/__init__.py → GANDLF_modules/metrics/__init__.py b/GANDLF/metrics/__init__.py → GANDLF_modules/metrics/__init__.py
diff --git a/GANDLF/metrics/classification.py → GANDLF_modules/metrics/classification.py b/GANDLF/metrics/classification.py → GANDLF_modules/metrics/classification.py
diff --git a/GANDLF/metrics/generic.py → GANDLF_modules/metrics/generic.py b/GANDLF/metrics/generic.py → GANDLF_modules/metrics/generic.py
diff --git a/GANDLF/metrics/regression.py → GANDLF_modules/metrics/regression.py b/GANDLF/metrics/regression.py → GANDLF_modules/metrics/regression.py
diff --git a/GANDLF/metrics/segmentation.py → GANDLF_modules/metrics/segmentation.py b/GANDLF/metrics/segmentation.py → GANDLF_modules/metrics/segmentation.py
diff --git a/GANDLF/metrics/synthesis.py → GANDLF_modules/metrics/synthesis.py b/GANDLF/metrics/synthesis.py → GANDLF_modules/metrics/synthesis.py
diff --git a/GANDLF/models/MSDNet.py → GANDLF_modules/models/MSDNet.py b/GANDLF/models/MSDNet.py → GANDLF_modules/models/MSDNet.py
diff --git a/GANDLF/models/Readme.md → GANDLF_modules/models/Readme.md b/GANDLF/models/Readme.md → GANDLF_modules/models/Readme.md
diff --git a/GANDLF/models/__init__.py → GANDLF_modules/models/__init__.py b/GANDLF/models/__init__.py → GANDLF_modules/models/__init__.py
diff --git a/GANDLF/models/brain_age.py → GANDLF_modules/models/brain_age.py b/GANDLF/models/brain_age.py → GANDLF_modules/models/brain_age.py
diff --git a/GANDLF/models/deep_unet.py → GANDLF_modules/models/deep_unet.py b/GANDLF/models/deep_unet.py → GANDLF_modules/models/deep_unet.py
diff --git a/GANDLF/models/densenet.py → GANDLF_modules/models/densenet.py b/GANDLF/models/densenet.py → GANDLF_modules/models/densenet.py
diff --git a/GANDLF/models/efficientnet.py → GANDLF_modules/models/efficientnet.py b/GANDLF/models/efficientnet.py → GANDLF_modules/models/efficientnet.py
diff --git a/GANDLF/models/fcn.py → GANDLF_modules/models/fcn.py b/GANDLF/models/fcn.py → GANDLF_modules/models/fcn.py
diff --git a/GANDLF/models/imagenet_unet.py → GANDLF_modules/models/imagenet_unet.py b/GANDLF/models/imagenet_unet.py → GANDLF_modules/models/imagenet_unet.py
diff --git a/GANDLF/models/imagenet_vgg.py → GANDLF_modules/models/imagenet_vgg.py b/GANDLF/models/imagenet_vgg.py → GANDLF_modules/models/imagenet_vgg.py
diff --git a/GANDLF/models/light_unet.py → GANDLF_modules/models/light_unet.py b/GANDLF/models/light_unet.py → GANDLF_modules/models/light_unet.py
diff --git a/GANDLF/models/light_unet_multilayer.py → ...F_modules/models/light_unet_multilayer.py b/GANDLF/models/light_unet_multilayer.py → ...F_modules/models/light_unet_multilayer.py
diff --git a/GANDLF/models/modelBase.py → GANDLF_modules/models/modelBase.py b/GANDLF/models/modelBase.py → GANDLF_modules/models/modelBase.py
diff --git a/GANDLF/models/resnet.py → GANDLF_modules/models/resnet.py b/GANDLF/models/resnet.py → GANDLF_modules/models/resnet.py
diff --git a/GANDLF/models/sdnet.py → GANDLF_modules/models/sdnet.py b/GANDLF/models/sdnet.py → GANDLF_modules/models/sdnet.py
diff --git a/GANDLF/models/seg_modules/DecodingModule.py → ...ules/models/seg_modules/DecodingModule.py b/GANDLF/models/seg_modules/DecodingModule.py → ...ules/models/seg_modules/DecodingModule.py
diff --git a/.../models/seg_modules/DownsamplingModule.py → .../models/seg_modules/DownsamplingModule.py b/.../models/seg_modules/DownsamplingModule.py → .../models/seg_modules/DownsamplingModule.py
diff --git a/GANDLF/models/seg_modules/EncodingModule.py → ...ules/models/seg_modules/EncodingModule.py b/GANDLF/models/seg_modules/EncodingModule.py → ...ules/models/seg_modules/EncodingModule.py
diff --git a/...models/seg_modules/FCNUpsamplingModule.py → ...models/seg_modules/FCNUpsamplingModule.py b/...models/seg_modules/FCNUpsamplingModule.py → ...models/seg_modules/FCNUpsamplingModule.py
diff --git a/GANDLF/models/seg_modules/IncConv.py → GANDLF_modules/models/seg_modules/IncConv.py b/GANDLF/models/seg_modules/IncConv.py → GANDLF_modules/models/seg_modules/IncConv.py
diff --git a/...dels/seg_modules/IncDownsamplingModule.py → ...dels/seg_modules/IncDownsamplingModule.py b/...dels/seg_modules/IncDownsamplingModule.py → ...dels/seg_modules/IncDownsamplingModule.py
diff --git a/GANDLF/models/seg_modules/IncDropout.py → ..._modules/models/seg_modules/IncDropout.py b/GANDLF/models/seg_modules/IncDropout.py → ..._modules/models/seg_modules/IncDropout.py
diff --git a/...models/seg_modules/IncUpsamplingModule.py → ...models/seg_modules/IncUpsamplingModule.py b/...models/seg_modules/IncUpsamplingModule.py → ...models/seg_modules/IncUpsamplingModule.py
diff --git a/GANDLF/models/seg_modules/InceptionModule.py → ...les/models/seg_modules/InceptionModule.py b/GANDLF/models/seg_modules/InceptionModule.py → ...les/models/seg_modules/InceptionModule.py
diff --git a/GANDLF/models/seg_modules/InitialConv.py → ...modules/models/seg_modules/InitialConv.py b/GANDLF/models/seg_modules/InitialConv.py → ...modules/models/seg_modules/InitialConv.py
diff --git a/GANDLF/models/seg_modules/Interpolate.py → ...modules/models/seg_modules/Interpolate.py b/GANDLF/models/seg_modules/Interpolate.py → ...modules/models/seg_modules/Interpolate.py
diff --git a/GANDLF/models/seg_modules/Readme.md → GANDLF_modules/models/seg_modules/Readme.md b/GANDLF/models/seg_modules/Readme.md → GANDLF_modules/models/seg_modules/Readme.md
diff --git a/GANDLF/models/seg_modules/ResNetModule.py → ...odules/models/seg_modules/ResNetModule.py b/GANDLF/models/seg_modules/ResNetModule.py → ...odules/models/seg_modules/ResNetModule.py
diff --git a/...LF/models/seg_modules/UpsamplingModule.py → ...es/models/seg_modules/UpsamplingModule.py b/...LF/models/seg_modules/UpsamplingModule.py → ...es/models/seg_modules/UpsamplingModule.py
diff --git a/GANDLF/models/seg_modules/__init__.py → ...LF_modules/models/seg_modules/__init__.py b/GANDLF/models/seg_modules/__init__.py → ...LF_modules/models/seg_modules/__init__.py
diff --git a/GANDLF/models/seg_modules/add_conv_block.py → ...ules/models/seg_modules/add_conv_block.py b/GANDLF/models/seg_modules/add_conv_block.py → ...ules/models/seg_modules/add_conv_block.py
diff --git a/.../seg_modules/add_downsample_conv_block.py → .../seg_modules/add_downsample_conv_block.py b/.../seg_modules/add_downsample_conv_block.py → .../seg_modules/add_downsample_conv_block.py
diff --git a/GANDLF/models/seg_modules/average_pool.py → ...odules/models/seg_modules/average_pool.py b/GANDLF/models/seg_modules/average_pool.py → ...odules/models/seg_modules/average_pool.py
diff --git a/GANDLF/models/seg_modules/out_conv.py → ...LF_modules/models/seg_modules/out_conv.py b/GANDLF/models/seg_modules/out_conv.py → ...LF_modules/models/seg_modules/out_conv.py
diff --git a/GANDLF/models/transunet.py → GANDLF_modules/models/transunet.py b/GANDLF/models/transunet.py → GANDLF_modules/models/transunet.py
diff --git a/GANDLF/models/uinc.py → GANDLF_modules/models/uinc.py b/GANDLF/models/uinc.py → GANDLF_modules/models/uinc.py
diff --git a/GANDLF/models/unet.py → GANDLF_modules/models/unet.py b/GANDLF/models/unet.py → GANDLF_modules/models/unet.py
diff --git a/GANDLF/models/unet_multilayer.py → GANDLF_modules/models/unet_multilayer.py b/GANDLF/models/unet_multilayer.py → GANDLF_modules/models/unet_multilayer.py
diff --git a/GANDLF/models/unetr.py → GANDLF_modules/models/unetr.py b/GANDLF/models/unetr.py → GANDLF_modules/models/unetr.py
diff --git a/GANDLF/models/vgg.py → GANDLF_modules/models/vgg.py b/GANDLF/models/vgg.py → GANDLF_modules/models/vgg.py
diff --git a/GANDLF/optimizers/README.md → GANDLF_modules/optimizers/README.md b/GANDLF/optimizers/README.md → GANDLF_modules/optimizers/README.md
diff --git a/GANDLF/optimizers/__init__.py → GANDLF_modules/optimizers/__init__.py b/GANDLF/optimizers/__init__.py → GANDLF_modules/optimizers/__init__.py
diff --git a/GANDLF/optimizers/wrap_torch.py → GANDLF_modules/optimizers/wrap_torch.py b/GANDLF/optimizers/wrap_torch.py → GANDLF_modules/optimizers/wrap_torch.py
diff --git a/GANDLF/parseConfig.py → GANDLF_modules/parseConfig.py b/GANDLF/parseConfig.py → GANDLF_modules/parseConfig.py
diff --git a/GANDLF/schedulers/README.md → GANDLF_modules/schedulers/README.md b/GANDLF/schedulers/README.md → GANDLF_modules/schedulers/README.md
diff --git a/GANDLF/schedulers/__init__.py → GANDLF_modules/schedulers/__init__.py b/GANDLF/schedulers/__init__.py → GANDLF_modules/schedulers/__init__.py
diff --git a/GANDLF/schedulers/wrap_torch.py → GANDLF_modules/schedulers/wrap_torch.py b/GANDLF/schedulers/wrap_torch.py → GANDLF_modules/schedulers/wrap_torch.py
diff --git a/GANDLF/training_manager.py → GANDLF_modules/training_manager.py b/GANDLF/training_manager.py → GANDLF_modules/training_manager.py
diff --git a/GANDLF/utils/__init__.py → GANDLF_modules/utils/__init__.py b/GANDLF/utils/__init__.py → GANDLF_modules/utils/__init__.py
diff --git a/GANDLF/utils/exceptions.py → GANDLF_modules/utils/exceptions.py b/GANDLF/utils/exceptions.py → GANDLF_modules/utils/exceptions.py
diff --git a/GANDLF/utils/generic.py → GANDLF_modules/utils/generic.py b/GANDLF/utils/generic.py → GANDLF_modules/utils/generic.py
diff --git a/GANDLF/utils/handle_collisions.py → GANDLF_modules/utils/handle_collisions.py b/GANDLF/utils/handle_collisions.py → GANDLF_modules/utils/handle_collisions.py
diff --git a/GANDLF/utils/imaging.py → GANDLF_modules/utils/imaging.py b/GANDLF/utils/imaging.py → GANDLF_modules/utils/imaging.py
diff --git a/GANDLF/utils/modelbase.py → GANDLF_modules/utils/modelbase.py b/GANDLF/utils/modelbase.py → GANDLF_modules/utils/modelbase.py
diff --git a/GANDLF/utils/modelio.py → GANDLF_modules/utils/modelio.py b/GANDLF/utils/modelio.py → GANDLF_modules/utils/modelio.py
diff --git a/GANDLF/utils/parameter_processing.py → GANDLF_modules/utils/parameter_processing.py b/GANDLF/utils/parameter_processing.py → GANDLF_modules/utils/parameter_processing.py
diff --git a/GANDLF/utils/tensor.py → GANDLF_modules/utils/tensor.py b/GANDLF/utils/tensor.py → GANDLF_modules/utils/tensor.py
diff --git a/GANDLF/utils/write_parse.py → GANDLF_modules/utils/write_parse.py b/GANDLF/utils/write_parse.py → GANDLF_modules/utils/write_parse.py
diff --git a/GANDLF/version.py → GANDLF_modules/version.py b/GANDLF/version.py → GANDLF_modules/version.py